| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,088,675 – 26,088,770 |
| Length | 95 |
| Max. P | 0.530094 |
| Location | 26,088,675 – 26,088,770 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.97 |
| Shannon entropy | 0.45427 |
| G+C content | 0.46125 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -14.40 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26088675 95 + 27905053 CCAAAAGUUGAGGAAUGGCCAGGAGGCGAGACCACAACACAGACAGU------CCGUUCACUGAUGCACUUAGCCAAAUAAAU------------GGCUAUAAAACUUUAAAG ......((((.((..(.(((....))).)..)).)))).....((((------......)))).......((((((......)------------)))))............. ( -22.80, z-score = -1.95, R) >droSim1.chr3R 25755224 106 + 27517382 CCAAAAGUUGUGGAAUGGCCAGGAGGCGAAACCACAACACAGACAGG------CCGUUCACUGAUGCACUUAGCCAAAAUAAUGUUCCUUUUCCUGGCUAUAUAACUUAAAA- ....(((((((...((((((((((((.(.(((...........(((.------.......)))..((.....)).........))).).)))))))))))))))))))....- ( -26.50, z-score = -1.20, R) >droSec1.super_4 4938997 105 + 6179234 CCAAAAGUUGUGGAAUGGCCAAGAGGCGAAACCACAACACAGACAGG------CCGUUCACUGAUGCACUUAGCCAUAA-AAUUUUCCUUUUCCUGGCUAUAAAACUUAAAA- ......(((((((..(.(((....))).)..))))))).....(((.------.......))).......((((((..(-((.......)))..))))))............- ( -26.30, z-score = -1.90, R) >droYak2.chr3R 27024564 90 + 28832112 CCAAAAGUUGUGGCAUGGCCAGGAGGCGAAACCACAACACAGACGGGUGUUGGCCUCUCGAUGAUGCACUUGGCCAAAUAAGUGUUAAAG----------------------- ......(((((((..(.(((....))).)..)))))))...((.((((....)))).))......(((((((......))))))).....----------------------- ( -27.70, z-score = -1.05, R) >droEre2.scaffold_4820 8563006 84 - 10470090 CCAAAAGUCGAGGAAUGGCCAGGAGGCGAAACCGCAACACAGACGGG------CCUUUCGAUGAUGCACUUAGCCAAAUAAAUGUGAAUG----------------------- ......(((((((...((((..(..(((....)))..).......))------)))))))))...(((.(((......))).))).....----------------------- ( -16.70, z-score = 0.46, R) >consensus CCAAAAGUUGUGGAAUGGCCAGGAGGCGAAACCACAACACAGACAGG______CCGUUCACUGAUGCACUUAGCCAAAUAAAUGUUAAUG_____GGCUAUA_AACUU_AAA_ ......(((((((..(.(((....))).)..)))))))...((..((......))..))......((.....))....................................... (-14.40 = -15.20 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:54 2011