| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,084,810 – 26,084,901 |
| Length | 91 |
| Max. P | 0.663937 |
| Location | 26,084,810 – 26,084,901 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 82.31 |
| Shannon entropy | 0.31315 |
| G+C content | 0.31056 |
| Mean single sequence MFE | -20.38 |
| Consensus MFE | -10.94 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663937 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26084810 91 - 27905053 -UUGGUAUUUUUAU--ACCAAAUGAAGCAACCUCCUCAGUUUCGGUGUGACCAAAUUAAUGUAUGAAGCUUAGUAUUUUUAUGCUGAAAUACUA -(((((((....))--))))).................((((((((((((....(((((.((.....)))))))....)))))))))))).... ( -18.10, z-score = -1.55, R) >droSim1.chr3R 25751364 90 - 27517382 -AUGGUAUUUUAAU--ACCAAGUGUAGG-AACUCUUCAUUUUAGGUGUGACCAAAUUAAUGUAUAAAGCUUAGUAUUUUUAUGCUGAAAUACUA -.((((((((((((--((((((((.(((-....))))))))..)))))............((((((((........)))))))))))))))))) ( -19.40, z-score = -1.75, R) >droSec1.super_4 4935106 90 - 6179234 -UUGGUAUUUAUAU--ACCAAGGGAUGC-ACCUCCUCACUUUCUGUGUGCCCAAAUUAAUGUAAAAAGCUUAGUAUUUUUUUGCUGAAAUACUA -(((((((....))--)))))(((.(((-((.............))))))))..................(((((((((......))))))))) ( -20.32, z-score = -2.17, R) >droYak2.chr3R 27020600 92 - 28832112 -UUGGUAUUCUUUUUAAUCAAAAGCAGC-ACUGUUUCGUUUUAAGUGUGACCAACUUCAUGUAUAAAGCGUAGUAUUUUUGUGCUAAAAUACUA -.((((((((((((.....))))).(((-((.((..(((((((.(..(((......)))..).)))))))....))....)))))..))))))) ( -18.50, z-score = -1.47, R) >droEre2.scaffold_4820 8559137 91 + 10470090 UUUGGUAUUUUUAU--ACCAAAUGAAGC-ACCGCUUCAUUUUAGGUGUGACCAAAUCGAUGUAUAAAGCUCAGUAUUUUUAUGCUGAAAUACUA ..(((((((.((((--((((((((((((-...)))))))))..)))))))...................(((((((....)))))))))))))) ( -25.60, z-score = -4.14, R) >consensus _UUGGUAUUUUUAU__ACCAAAUGAAGC_ACCUCUUCAUUUUAGGUGUGACCAAAUUAAUGUAUAAAGCUUAGUAUUUUUAUGCUGAAAUACUA ..(((((((((.....(((((((((((......))))))))..)))..............((((((((........)))))))).))))))))) (-10.94 = -11.82 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:53 2011