| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,078,722 – 26,078,815 |
| Length | 93 |
| Max. P | 0.671195 |
| Location | 26,078,722 – 26,078,815 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 95.27 |
| Shannon entropy | 0.08298 |
| G+C content | 0.44086 |
| Mean single sequence MFE | -22.19 |
| Consensus MFE | -20.86 |
| Energy contribution | -20.70 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26078722 93 - 27905053 ACGACUUCUUUGACGCCGCCAAUAAUAACGAAUCACACAUGAGUGUUUCUUGAUUCCCAACUGUUUGGCGGUAAGUUUCGAUUCUGAUUGAUG .(((...(((....((((((((.......(((((((((....)))).....)))))........)))))))))))..)))............. ( -21.66, z-score = -1.41, R) >droSim1.chr3R 25745268 93 - 27517382 CCGACUUCUGUGACGCCGCCAAUAAAAACGAAUCACACAUGAGUGCUUCUUGAUUCCCAACUGUUUGGCGGUAAGUUUUGAUUCUGAUUGAUC ..((..((...(((((((((((.......(((((((((....))).....))))))........))))))))..)))..)).))......... ( -21.16, z-score = -1.15, R) >droSec1.super_4 4928991 93 - 6179234 CCGACUUCUGUGACGCCGCCAAUAAAAACGAAUCACACAUGAGUGCUUCUUGAUUCCCAACUGUUUGGCGGUAAGUUUUGAUUCUGAUUGAUC ..((..((...(((((((((((.......(((((((((....))).....))))))........))))))))..)))..)).))......... ( -21.16, z-score = -1.15, R) >droYak2.chr3R 27012861 93 - 28832112 CCGGCUUCUUUGACGCCGCCAAUAAAAGCGAAUCACACAUGAGUGCUUCUUGAUUCCCAACUGUUUGGCGGUAGGUUUUGAUUCUGAUUGAUC .(((..((...(((((((((((.......(((((((((....))).....))))))........))))))))..)))..))..)))....... ( -24.16, z-score = -1.13, R) >droEre2.scaffold_4820 8552960 93 + 10470090 CCGACUUCUUUGACGCCGCCAAUAAAAACGAAUCACACAUGAGUGCUUCUUGAUUCCCAACUGAUUGGCGGUAGGUUUUGAUUCUGAUUGAUC ..((..((...((((((((((((......(((((((((....))).....)))))).......)))))))))..)))..)).))......... ( -22.82, z-score = -1.66, R) >consensus CCGACUUCUUUGACGCCGCCAAUAAAAACGAAUCACACAUGAGUGCUUCUUGAUUCCCAACUGUUUGGCGGUAAGUUUUGAUUCUGAUUGAUC ..((..((...(((((((((((.......(((((((((....))).....))))))........))))))))..)))..)).))......... (-20.86 = -20.70 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:52 2011