| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,076,271 – 26,076,334 |
| Length | 63 |
| Max. P | 0.556795 |
| Location | 26,076,271 – 26,076,334 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 88.03 |
| Shannon entropy | 0.21022 |
| G+C content | 0.30503 |
| Mean single sequence MFE | -9.72 |
| Consensus MFE | -6.32 |
| Energy contribution | -6.24 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26076271 63 + 27905053 AAGAUAUGUAGAUACAAUCUACUUUACUAUCUAUAGAUUUGCUUACUAACAAGCAGACCGAAA .(((((.((((((...)))))).....)))))...(.(((((((......))))))).).... ( -12.40, z-score = -3.13, R) >droEre2.scaffold_4820 8550484 55 - 10470090 AAGAUAUGUAGAUAAUA--UACUUCACAAUCUACUGAUUUGCUUACUAACAACGAAA------ .((((..((((((....--.........))))))..)))).................------ ( -4.42, z-score = -0.57, R) >droYak2.chr3R 27010257 61 + 28832112 AAGAUAUGUAGAUACUA--UACUUCACUGUCUAUUGAUUUGCUUACUAACAAGCAGACCGAAA .(((((((.((......--..)).)).))))).(((.(((((((......))))))).))).. ( -10.80, z-score = -1.93, R) >droSec1.super_4 4926850 61 + 6179234 AAGAUAUGUAGAUACUA--UACUUCACAAUCUAUUGAUUUGCUUACUAACAAGCAGACCGAAA ..((..(((((...)))--))..))........(((.(((((((......))))))).))).. ( -10.50, z-score = -2.57, R) >droSim1.chr3R 25742575 61 + 27517382 AAGAUAUGUAGAUACUA--UACUUCACAAUCUAUUGAUUUGCUUACUAACAAGCAGACCGAAA ..((..(((((...)))--))..))........(((.(((((((......))))))).))).. ( -10.50, z-score = -2.57, R) >consensus AAGAUAUGUAGAUACUA__UACUUCACAAUCUAUUGAUUUGCUUACUAACAAGCAGACCGAAA .......((((((...............))))))...(((((((......)))))))...... ( -6.32 = -6.24 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:51 2011