| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,069,271 – 26,069,365 |
| Length | 94 |
| Max. P | 0.561495 |
| Location | 26,069,271 – 26,069,365 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.70 |
| Shannon entropy | 0.43188 |
| G+C content | 0.51525 |
| Mean single sequence MFE | -29.66 |
| Consensus MFE | -13.77 |
| Energy contribution | -14.31 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26069271 94 + 27905053 ------ACCGAUACCGAUCGUCCGGCU-GGUCCGGUUAUAAUAUAUAU-----UGCAUAACCG--ACACAGCUGGCCAGCUGGUUUCACUUUCGUUCAAGGCGAGAGU ------...((.((((...(.((((((-((((.((((((.........-----...)))))))--)).))))))).)...)))).))((((((((.....)))))))) ( -34.50, z-score = -3.33, R) >droPer1.super_7 206445 77 - 4445127 ------CCCGAUAAC--UGGUCCGGCUCGGCUCGGCUAGGUUAUG-----------------------CAAUUCUCCAGCUGGUUUCACUUUCGUUCGGGCCACGACA ------(((((....--.(((((((((.((....((........)-----------------------)......))))))))....))).....)))))........ ( -20.80, z-score = 0.19, R) >dp4.chr2 29355611 77 - 30794189 ------CCCGAUAAC--UGGUCCGGCUCGGCUCGGCUAGGUUAUG-----------------------CAAUUCUUCAGCUGGUUUCACUUUCGUUCGGGCCACGACA ------(((((....--.(((((((((.((....((........)-----------------------)....))..))))))....))).....)))))........ ( -19.10, z-score = 0.50, R) >droEre2.scaffold_4820 8543104 96 - 10470090 ------ACCGAUACCGAUCGUCCGGCU-GGUCCGGUUAUAAUAUAUAUAU---UGCAUAACCG--ACUCAGCUGGCCAGCUGGUUUCACUUUCGUUCAAGGCGAGAGU ------...((.((((...(.((((((-((((.((((((((((....)))---)..)))))))--)).))))))).)...)))).))((((((((.....)))))))) ( -35.10, z-score = -3.47, R) >droYak2.chr3R 27002861 107 + 28832112 AGCGAUACCGAUAGCGAUCGUCCGGCU-GGUCCGGUUAUAGUAUGUAUAUUAUUGCAUAACCACAACUCAGCUGGCCAGCUGGUUUCACUUUCGUUCAAGGCGAGAUU .(((((..((....)))))))((((((-((.((((((....((((((......))))))..........))))))))))))))......((((((.....)))))).. ( -32.94, z-score = -1.79, R) >droSec1.super_4 4919577 94 + 6179234 ------ACCGAUACCGAUCGUCCGGCU-GGUCCGGUUAUAAUAUAUAU-----UGCAUAACCG--ACUCAGCUGGCCAGCUGGUUUCACUUUCGUUCAAGGCGAGCGU ------...((.((((...(.((((((-((((.((((((.........-----...)))))))--)).))))))).)...)))).)).....(((((.....))))). ( -30.70, z-score = -1.85, R) >droSim1.chr3R 25735225 94 + 27517382 ------ACCGAUACCGAUCGUCCGGCU-GGUCCGGUUAUAAUAUAUAU-----UGCAUAACCG--ACUCAGCUGGCCAGCUGGUUUCACUUUCGUUCAAGGCGAGAGU ------...((.((((...(.((((((-((((.((((((.........-----...)))))))--)).))))))).)...)))).))((((((((.....)))))))) ( -34.50, z-score = -3.22, R) >consensus ______ACCGAUACCGAUCGUCCGGCU_GGUCCGGUUAUAAUAUAUAU_____UGCAUAACCG__ACUCAGCUGGCCAGCUGGUUUCACUUUCGUUCAAGGCGAGAGU ........(((..........((((((.((.((((((................................))))))))))))))........))).............. (-13.77 = -14.31 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:47 2011