| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,047,160 – 26,047,256 |
| Length | 96 |
| Max. P | 0.802154 |
| Location | 26,047,160 – 26,047,256 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.45 |
| Shannon entropy | 0.38966 |
| G+C content | 0.32450 |
| Mean single sequence MFE | -19.82 |
| Consensus MFE | -9.35 |
| Energy contribution | -9.22 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802154 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 26047160 96 + 27905053 ----------------CUCUCCAACG-GCUGUCAGCUUC-CCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ----------------..........-(((((((.....-..(((....))).....))))))).(((((((-((((((...((((.....)))).)))))))))))))...... ( -22.00, z-score = -2.69, R) >droSim1.chr3R 25714753 96 + 27517382 ----------------CUCUCCAACG-GCUGCCAGCUUC-CCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ----------------..........-(((((((.....-..(((....))).....))))))).(((((((-((((((...((((.....)))).)))))))))))))...... ( -24.70, z-score = -3.54, R) >droSec1.super_4 4898636 96 + 6179234 ----------------CUCUCCAACG-GCUGCCAGCUUC-CCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ----------------..........-(((((((.....-..(((....))).....))))))).(((((((-((((((...((((.....)))).)))))))))))))...... ( -24.70, z-score = -3.54, R) >droYak2.chr3R 26980762 92 + 28832112 ----------------CUCUCCAAUG-GCUG----CUUC-CCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ----------------..........-((((----((..-..(((....)))......)))))).(((((((-((((((...((((.....)))).)))))))))))))...... ( -21.20, z-score = -2.80, R) >droEre2.scaffold_4820 8522343 98 - 10470090 --------------CUUACUCCAAUG-GCAGCCAGCUUC-CCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG --------------((((.((.....-((.((((.....-..(((....))).....)))).))..((((((-((((((...((((.....)))).)))))))))))))).)))) ( -19.50, z-score = -1.48, R) >droAna3.scaffold_13340 21082367 92 + 23697760 ----------------CUCUCGUCCC-GCA-----UUUC-CCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ----------------.........(-((.-----....-.(((.(((.....))).)))..)))..((((((((((((...((((.....)))).))))))))))))....... ( -14.20, z-score = -1.07, R) >dp4.chr2 29334487 79 - 30794189 ----------------------------------CUUUC-CCCGAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ----------------------------------.....-.(((.(((.....))).))).....(((((((-((((((...((((.....)))).)))))))))))))...... ( -12.80, z-score = -1.35, R) >droPer1.super_7 185294 79 - 4445127 -----------------------------C-----UUUC-CCCGAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG -----------------------------.-----....-.(((.(((.....))).))).....(((((((-((((((...((((.....)))).)))))))))))))...... ( -12.80, z-score = -1.35, R) >droWil1.scaffold_181130 9513563 81 + 16660200 -------------------------------UUGCCAU--GUCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUCUGAUUAAG -------------------------------(((((((--..(((....)))....))))))).....((((-((((((...((((.....)))).))))))))))......... ( -17.20, z-score = -2.12, R) >droVir3.scaffold_12855 3133513 107 + 10161210 -------CUCUCUUCCCACUCCAACUUAUUGAUGCCCUCUGCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG -------.....................(((((...(.((((((.(((.....))).)))))).)(((((((-((((((...((((.....)))).)))))))))))))))))). ( -22.20, z-score = -3.23, R) >droMoj3.scaffold_6540 24079433 112 - 34148556 UUUUUUUCGUUUGUUGCUCGCCCCCAAAUUGAUGCCCU--GCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ............((((((......(((((((.((....--..)).)))))))......)))))).(((((((-((((((...((((.....)))).)))))))))))))...... ( -23.00, z-score = -2.30, R) >droGri2.scaffold_14906 5828846 100 + 14172833 ----------UUUUCUUUGGUCCCCG--UUGAUGGCAU--GCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA-UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG ----------......((((((....--......((.(--((((.(((.....))).)))))))..((((((-((((((...((((.....)))).)))))))))))))))))). ( -23.50, z-score = -2.21, R) >consensus ________________CUCUCCAACG_GCUG___GCUUC_CCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAA_UUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAG .........................................(((.(((.....))).))).....(((((((.((((((...((((.....)))).)))))))))))))...... ( -9.35 = -9.22 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:44 2011