| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,046,504 – 26,046,555 |
| Length | 51 |
| Max. P | 0.985628 |
| Location | 26,046,504 – 26,046,555 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 86.52 |
| Shannon entropy | 0.22586 |
| G+C content | 0.44809 |
| Mean single sequence MFE | -10.90 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.14 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26046504 51 - 27905053 CAAAAACCAUGCCAG------AACAGGGCAAGAGUCCGCAUUUACAUAAUGCUCUUG .............((------(...((((....))))(((((.....)))))))).. ( -9.50, z-score = -1.00, R) >droSim1.chr3R 25714112 51 - 27517382 CAAAAACCAUGCCAG------AACAGGACAAGAGUCCGCAUUUACAUAAUGCUCUUG .............((------(...((((....))))(((((.....)))))))).. ( -10.10, z-score = -2.25, R) >droSec1.super_4 4897994 51 - 6179234 CAAAAACCAUGCCAG------AACAGGACCAGAGUCCGCAUUUACAUAAUGCUCUUG .............((------(...((((....))))(((((.....)))))))).. ( -9.60, z-score = -2.00, R) >droYak2.chr3R 26980085 57 - 28832112 CAAAAGCCAUAGCAGAAAGGUUGCAGGACAAGAGUCCGCAUUUACAUAAUGCCCUUC .....((....))...((((.....((((....))))(((((.....))))))))). ( -12.70, z-score = -1.98, R) >droEre2.scaffold_4820 8521710 51 + 10470090 CAAAAACCAUAGCAG------CACAGGACGAGAGUCCGCAUUUACAUAAUGCUCUUC ...............------....((((....))))(((((.....)))))..... ( -12.60, z-score = -3.53, R) >consensus CAAAAACCAUGCCAG______AACAGGACAAGAGUCCGCAUUUACAUAAUGCUCUUG .........................((((....))))(((((.....)))))..... (-10.30 = -10.14 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:43 2011