| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,030,244 – 26,030,356 |
| Length | 112 |
| Max. P | 0.739529 |
| Location | 26,030,244 – 26,030,356 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.64 |
| Shannon entropy | 0.32791 |
| G+C content | 0.34623 |
| Mean single sequence MFE | -15.24 |
| Consensus MFE | -11.17 |
| Energy contribution | -10.86 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26030244 112 + 27905053 AGCAGCAGACUUAUCUGCCGUACUGGAAUUGGUUUAUAAAUAUUACCUUACCAUUCAAAAAUAUUUUAUCAGUCCUCCAAUCGACUUGCACCAACUUUCUAAGUUUCAUACG .((((((((....)))))((...((((((((((....(((((((...............))))))).))))))..))))..))...)))....................... ( -17.76, z-score = -1.83, R) >droEre2.scaffold_4820 8502488 100 - 10470090 AGCAGCAGACUUAUCUGCCGUACUGAAAUUGGUUUAUAAAUAUCACCAAACCAUUUAAAAAUAUUUUAUCAAUCCCUCAAUCAACUU---CAUGUUUCAUACG--------- ....(((((....)))))((((.((((((((((((............))))))..((((.....))))...................---...))))))))))--------- ( -13.30, z-score = -2.26, R) >droYak2.chr3R 26963530 111 + 28832112 AGCAGCGGACUUAUCUGCCACACUGAAAUUGGUUUAUAAAUAUCACCUAACAAUUAAAAAAUAUUUUAUCAGUCCUUCCAUCAACUUGCACUAACUUUC-GGGCUUCAUAUG (((.(((((....)))))....(((((((((((.((.............((...(((((....)))))...)).............)).))))).))))-)))))....... ( -13.97, z-score = -0.32, R) >droSim1.chr3R 25698506 101 + 27517382 AGCAGCAGACUUAUCUGCCGUACUGGAAUUGGUUUAUAAAUAUCACCUUACCAUUCAAAAAUAUUUUAUCAGUCCUCCAAUCGUCUUGCACCAACUUUUUA----------- .((((((((....)))))((...((((((((((....((((((.................)))))).))))))..))))..))...)))............----------- ( -15.93, z-score = -1.76, R) >consensus AGCAGCAGACUUAUCUGCCGUACUGAAAUUGGUUUAUAAAUAUCACCUAACCAUUCAAAAAUAUUUUAUCAGUCCUCCAAUCAACUUGCACCAACUUUCUA_G_________ .((.(((((....))))).))..((((((((((....((((((.................)))))).))))))..))))................................. (-11.17 = -10.86 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:34 2011