| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,201,430 – 9,201,543 |
| Length | 113 |
| Max. P | 0.578731 |
| Location | 9,201,430 – 9,201,543 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.82 |
| Shannon entropy | 0.39491 |
| G+C content | 0.36678 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -16.74 |
| Energy contribution | -17.77 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9201430 113 + 23011544 UUAUCAAAAGGCGCAGAGUAGGUGGCUAUUACGCUAUUAAAGCUUCAAGUUUAAUGUCCUCUAAGAGGGCAUAACAAAGGUGAAAUAUUUCGCAGUAUUCCGAUGUAAUAUAA .((((....((((...(((((....))))).))))......(((....(((..((((((((...)))))))))))....(((((....)))))))).....))))........ ( -24.00, z-score = -0.72, R) >droAna3.scaffold_12943 548999 92 + 5039921 UCACCUAA--UUGGAGACUAGGCUGCUAUUACGUUAUAGUAGCUUCGAGUUUAAUGUCCUCCUUGAGGGCAUAGGGCAUA-GAUUUGAUGAAAAG------------------ ...((((.--....(((((.(((((((((......)))))))))...)))))..(((((((...))))))))))).....-..............------------------ ( -27.90, z-score = -2.25, R) >droEre2.scaffold_4929 9810270 113 + 26641161 UCGCCAAAAGCCACAAGGUAGGUGGCUAUUACGCUAUUAAAGCUUCAAGUUUAAUGUCCUCUAAGAGGGCAUAACAAAGGUGAAAUAUUUCUCAGUUUUCCAAUGUAAUUUAA (((((...((((((.......)))))).....(((.....))).....(((..((((((((...)))))))))))...))))).............................. ( -28.30, z-score = -2.51, R) >droYak2.chr2L 11871616 113 + 22324452 UAACCAAAAGGCAGAGAGUAGGUGGCUAUUACGCUACUAAAGCUUCGAGUUUAAUGUCCUCUAAGAGGGCAAAACAAAGGUGAAAUAUUUCUCAGCUUUUCAAUGUAAUUUAA ......((((((.(((((..((((((......))))))...((((...((((..(((((((...)))))))))))..)))).......))))).))))))............. ( -28.30, z-score = -1.87, R) >droSec1.super_3 4666211 113 + 7220098 UUAUCAAAAGGCGCAGAGUAGGUGGCUAUUACGCUAUUAAAGCUUCAAGUUUAAUGUCCUCUAAGAGGGCAUAACAAAGGUGAAAUAUUUCUCAGUAUUCCAAUGUAAUUUAA (((((...((((...((((.((((((......))))))...))))...)))).((((((((...))))))))......))))).............................. ( -21.30, z-score = -0.25, R) >droSim1.chr2L 8982695 113 + 22036055 UUAUCAAAAGGCGCAGAGUAGGUGGCUAUUACGCUAUUAAAGCUUCAAGUUUAAUGUCCUCUAAGAGGGCAUAACAAAGGUGAAAUAUUUCCCAGUAUUCCAAUGUAAUUUAA (((((...((((...((((.((((((......))))))...))))...)))).((((((((...))))))))......))))).............................. ( -21.30, z-score = -0.02, R) >consensus UUACCAAAAGGCGCAGAGUAGGUGGCUAUUACGCUAUUAAAGCUUCAAGUUUAAUGUCCUCUAAGAGGGCAUAACAAAGGUGAAAUAUUUCUCAGUAUUCCAAUGUAAUUUAA (((((...((((...((((.((((((......))))))...))))...)))).((((((((...))))))))......))))).............................. (-16.74 = -17.77 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:43 2011