| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,017,252 – 26,017,317 |
| Length | 65 |
| Max. P | 0.790507 |
| Location | 26,017,252 – 26,017,317 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 94.85 |
| Shannon entropy | 0.07064 |
| G+C content | 0.45593 |
| Mean single sequence MFE | -16.13 |
| Consensus MFE | -15.40 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26017252 65 - 27905053 UCUGCUUCUGAAAAGCUAAUGAUAUUUCGGUGCCAGCUCACAAGUGAACGUGGAGCUUGCCCAAU ...((((.....))))............((.((.(((((.((.(....).))))))).))))... ( -17.60, z-score = -1.44, R) >droSec1.super_4 4870010 64 - 6179234 UCUGC-UCCAAAAAACUAUUGAUAUUUCGGUGCCAGCUCACAAGUGAACGUGGAGCUUGCCCAAU .....-......................((.((.(((((.((.(....).))))))).))))... ( -15.40, z-score = -1.46, R) >droSim1.chr3R 25685090 64 - 27517382 UCUGC-UCCAAAAAACUAUUGAUAUUUCGGUGCCAGCUCACAAGUGAACGUGGAGCUUGCCCAAU .....-......................((.((.(((((.((.(....).))))))).))))... ( -15.40, z-score = -1.46, R) >consensus UCUGC_UCCAAAAAACUAUUGAUAUUUCGGUGCCAGCUCACAAGUGAACGUGGAGCUUGCCCAAU ............................((.((.(((((.((.(....).))))))).))))... (-15.40 = -15.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:28 2011