| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,015,033 – 26,015,094 |
| Length | 61 |
| Max. P | 0.950136 |
| Location | 26,015,033 – 26,015,094 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 77.34 |
| Shannon entropy | 0.35214 |
| G+C content | 0.37928 |
| Mean single sequence MFE | -8.45 |
| Consensus MFE | -5.69 |
| Energy contribution | -5.12 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26015033 61 + 27905053 GACCUUUGGAACCCCGAAC------UAUUUACAACAUGAAUAAAUCAUGAUUCACCAAAAACGCUGA ....(((((....))))).------.........(((((.....))))).................. ( -6.90, z-score = -2.14, R) >droEre2.scaffold_4820 8487121 57 - 10470090 AACCUUUGGAAGCCCAGACCACAAGUAUUUACAACAUGAAUAACUUGUGAGUCAUUG---------- ......(((....)))(((((((((((((((.....))))).))))))).)))....---------- ( -15.70, z-score = -3.80, R) >droSec1.super_4 4867764 61 + 6179234 GACCUUUGAAACCCCGAAC------UAUUUACAACAUGAAUAAAUCAUGAUUCACCAAAAGCGCUGA ...................------.........(((((.....))))).................. ( -4.00, z-score = -1.01, R) >droSim1.chr3R 25682478 61 + 27517382 GACCUUUGGAACCCCAAAC------UAUUUACAACAUGAAUAAAUCAUGAUUCACCAAAAGCGCUGA ....(((((....))))).------.........(((((.....))))).................. ( -7.20, z-score = -1.75, R) >consensus GACCUUUGGAACCCCAAAC______UAUUUACAACAUGAAUAAAUCAUGAUUCACCAAAAGCGCUGA ....(((((....)))))................(((((.....))))).................. ( -5.69 = -5.12 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:27 2011