| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,014,857 – 26,014,908 |
| Length | 51 |
| Max. P | 0.718477 |
| Location | 26,014,857 – 26,014,908 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 74.26 |
| Shannon entropy | 0.43044 |
| G+C content | 0.43717 |
| Mean single sequence MFE | -13.47 |
| Consensus MFE | -8.40 |
| Energy contribution | -8.27 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26014857 51 + 27905053 ----AGUGCUCACCGCACAGAUAAAUCAUCUUUUGUCUGG---CUUUGGGUCUUGGCA------- ----...(((((..((.((((((((......)))))))))---)..))))).......------- ( -15.60, z-score = -2.14, R) >droSim1.chr3R 25682309 51 + 27517382 ----AGUGCUCACCGCACAGAUAAAUCAUCUUUUGUCUGG---CUUUGGGUCUUGGCA------- ----...(((((..((.((((((((......)))))))))---)..))))).......------- ( -15.60, z-score = -2.14, R) >droSec1.super_4 4867607 51 + 6179234 ----AGUGCUCACCGCACAGAUAAAUCAUCUUUUGUCUGG---CUUUGGGUCUUGUGA------- ----...(((((..((.((((((((......)))))))))---)..))))).......------- ( -15.60, z-score = -2.32, R) >droYak2.chr3R 26948458 61 + 28832112 ----AGUGCUUACCGCACAGAUAAAUCAUCUUUUGUCUGGUUUGUCUGAGUUUUGAGUUUUGCGA ----.(((((((..((.(((((((((((.........))))))))))).))..)))))...)).. ( -16.40, z-score = -2.26, R) >droEre2.scaffold_4820 8486950 53 - 10470090 --AGUGUGCUUACCGCACAGAUAAAUCAUCUUUUGUCUGG---GUUUGGGUCUGGUGA------- --.....(((.(((((.((((((((......)))))))).---))...)))..)))..------- ( -12.60, z-score = -0.66, R) >droAna3.scaffold_13340 21049640 52 + 23697760 AGUUUGUUUUUAGCCGCCAGAUAAAUCAUCUCUU---UGA---CUUUGGGAAUCGACA------- .(((.((((.......(((((....(((......---)))---.))))))))).))).------- ( -5.01, z-score = 1.22, R) >consensus ____AGUGCUCACCGCACAGAUAAAUCAUCUUUUGUCUGG___CUUUGGGUCUUGACA_______ .......(((((.....((((((((......)))))))).......))))).............. ( -8.40 = -8.27 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:27 2011