| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,005,263 – 26,005,332 |
| Length | 69 |
| Max. P | 0.953514 |
| Location | 26,005,263 – 26,005,332 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 59.20 |
| Shannon entropy | 0.75619 |
| G+C content | 0.35291 |
| Mean single sequence MFE | -12.46 |
| Consensus MFE | -6.95 |
| Energy contribution | -6.44 |
| Covariance contribution | -0.51 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.953514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26005263 69 - 27905053 GGUUCCGAUGACUGGCAUCUUUGUUUGGAUUAUCUAUGUUAACAAAAGGUUAUUUGUUUAUAUUUAAGC---- ......((((((..(((....)).)..).))))).((((.((((((......)))))).))))......---- ( -8.90, z-score = 0.39, R) >droEre2.scaffold_4820 8477433 65 + 10470090 GGUGCCGAUGAUUGGCAUCU---UUUGGAUUACCUGUGUUAACAAAUGGGUUGUUUUAUUUAUUUAUC----- ((((((((...)))))))).---...((((.((((((........)))))).))))............----- ( -15.20, z-score = -2.02, R) >droYak2.chr3R 26938890 73 - 28832112 GGUGCCGAUGAUUGGCAUCUUUAUUUGGAUUACCUAUGUUAACAAGAAAAAGGUUACUUUUGAUUAUGAGAGC ((((((((...))))))))((((((..((..((((...((.....))...))))....))..)..)))))... ( -12.70, z-score = -0.52, R) >droSec1.super_4 4858041 71 - 6179234 GGUGCCGAUGAUUGGCAUCUUUGUUUGGAUUACCUAUGUUAACAAAAGGUUAUUUGUUUUUAUAUUUGAGA-- ((((((((...))))))))..........(((..((((..((((((......))))))..))))..)))..-- ( -14.60, z-score = -1.50, R) >droSim1.chr3R 25672717 71 - 27517382 GGUGCCGAUAACUGGCAUCUUUGUUUGGAUUACCUAUGUUAACAAAAGGUUAUUUGUUUAUAUAUUUGAGU-- (((((((.....)))))))..........(((..(((((.((((((......)))))).)))))..)))..-- ( -14.80, z-score = -1.33, R) >dp4.chr2 29293785 63 + 30794189 UAUUUCGAUUCCCGGAAUCGGGGUCCAAGUUAUCUGAAAUAAAUUUUGAUUACUACCAGCAGC---------- .((..((((((...))))))..))...(((.(((.(((.....))).))).))).........---------- ( -10.50, z-score = 0.07, R) >droPer1.super_7 141933 63 + 4445127 UAUUUCGAUUCCCGGAAUCGGGGUCCAAGUUAUCUGAAAUAAAUUUUGAUUACUACCAGCAGC---------- .((..((((((...))))))..))...(((.(((.(((.....))).))).))).........---------- ( -10.50, z-score = 0.07, R) >consensus GGUGCCGAUGACUGGCAUCUUUGUUUGGAUUACCUAUGUUAACAAAAGGUUAUUUGUUUUUAUUUAUG_____ (((((((.....)))))))...................................................... ( -6.95 = -6.44 + -0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:21 2011