| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,927,988 – 25,928,064 |
| Length | 76 |
| Max. P | 0.786847 |
| Location | 25,927,988 – 25,928,064 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 78.99 |
| Shannon entropy | 0.37757 |
| G+C content | 0.48674 |
| Mean single sequence MFE | -24.46 |
| Consensus MFE | -17.45 |
| Energy contribution | -17.79 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25927988 76 - 27905053 ----AUCGGUACCGGUGGGUCUGCCCCUUUUCGUGGCGG------AGGAGGCUUACAUCACAUUAUUAAUUGAAGGCCUCCGAAAA ----((((....))))...((((((.(.....).)))))------)((((((((.((.............)).))))))))..... ( -25.62, z-score = -1.26, R) >droSim1.chr3R 25594515 76 - 27517382 ----AUCGGUACCGGUGGGUCUGCCCCUUUUCGUGGCGG------AGGAGGCUUACAUCACAUUAUUAAUUGAAGGUCUCCGAAAA ----.((((.(((.((((((((.(((((......)).))------.).))))))))....((........))..)))..))))... ( -23.00, z-score = -0.67, R) >droSec1.super_4 4772215 76 - 6179234 ----AUCGGUACCGGUGGGUCUGCCCCUUUUCGUGGCGG------AGGAGGCUUACAUCACAUUAUUAAUUGAAGGUCUCCGAAAA ----.((((.(((.((((((((.(((((......)).))------.).))))))))....((........))..)))..))))... ( -23.00, z-score = -0.67, R) >droYak2.chr3R 26858508 76 - 28832112 ----AUCGGCACCGGUGGAUCUGCCCCUUUUCGUGGCGG------AGGAGGCUUACAUCACAUUAUUAAUUGAAGGCCUCCAAAAA ----((((....))))...((((((.(.....).)))))------)((((((((.((.............)).))))))))..... ( -25.72, z-score = -1.80, R) >droEre2.scaffold_4820 8397332 80 + 10470090 AUCCAUCGGUACCGGUGGAUCUGCCCCUUUUCGUGGCGG------AGGAGGCUUACAUCACAUUAUUAAUUGAAGGCCUCCAAAAA .(((((((....)))))))((((((.(.....).)))))------)((((((((.((.............)).))))))))..... ( -33.72, z-score = -4.24, R) >droAna3.scaffold_13340 20916139 81 - 23697760 ----AUCGG-AUCAAUCGAGCCCCCAAAAAAGAAGGGGGGACUUCAAUCGAAUUACAUAAGAGUGUUAAUUAAGAAACCCCCAGAA ----.((((-.((....)).))............(((((...(((.....((((((((....))).)))))..))).))))).)). ( -15.70, z-score = -0.03, R) >consensus ____AUCGGUACCGGUGGAUCUGCCCCUUUUCGUGGCGG______AGGAGGCUUACAUCACAUUAUUAAUUGAAGGCCUCCGAAAA ....((((....))))....(((((.(.....).))))).......((((((((.((.............)).))))))))..... (-17.45 = -17.79 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:19 2011