| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,921,494 – 25,921,544 |
| Length | 50 |
| Max. P | 0.912905 |
| Location | 25,921,494 – 25,921,544 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 68.39 |
| Shannon entropy | 0.41066 |
| G+C content | 0.58444 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -12.01 |
| Energy contribution | -11.90 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.912905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25921494 50 + 27905053 GACGGCUCUUCGACUCACUCGCUCCGCAUUGAGUGGGCUU---UCGAGCCGUU--------- ((((((((.....((((((((........))))))))...---..))))))))--------- ( -22.50, z-score = -3.36, R) >droSim1.chr3R 25586914 50 + 27517382 GGCGGCUCUCCGACUCACUCGCUCCGCUUUGAGUGGGCUU---UCGAGCAGUU--------- .((.((((.....((((((((........))))))))...---..)))).)).--------- ( -15.90, z-score = -0.08, R) >droEre2.scaffold_4820 8390741 60 - 10470090 --CGGCUCUUUGGCUCACUCGCUCCGCUUUGAGUGGAACUACUCCAAAGAGUGGAACUACUC --(.(((((((((.....((((((......)))))).......))))))))).)........ ( -19.30, z-score = -2.18, R) >consensus G_CGGCUCUUCGACUCACUCGCUCCGCUUUGAGUGGGCUU___UCGAGCAGUU_________ ....(((.(((((....(((((((......)))))))......))))).))).......... (-12.01 = -11.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:18 2011