| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,892,289 – 25,892,393 |
| Length | 104 |
| Max. P | 0.806108 |
| Location | 25,892,289 – 25,892,393 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 85.63 |
| Shannon entropy | 0.22285 |
| G+C content | 0.34349 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -16.58 |
| Energy contribution | -18.70 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25892289 104 + 27905053 UGUAGAUGAGGAAUGCGUAGAAAUUCCUUAUCAGCAUCGUUGAAAAGAAAAAUACUUUUACAAAGUCGCGACAUUGAGAUUCUUUUCAGAUAUGAGGCUUUAUU---------- ....((((((((((........))))))))))(((.((((((((((((((((....))).(((.((....)).)))...)))))))))...)))).))).....---------- ( -26.30, z-score = -2.40, R) >droYak2.chr3R 26822570 113 + 28832112 UGUAGAUAAGAAAAGCAAAGAAAUGCCUUAUCAGCAUCGCCGAAAAGAAAAAUACUUUUACCU-GCCGCGACUUUGAGAUUCUCUUGAGAUAUAAUGCUGUAUAGUUUGUUUAA ..((((((((....(((......))).(((((((((((((.(.....((((....))))....-.).)))).((..((.....))..))......))))).)))))))))))). ( -19.40, z-score = -0.37, R) >droSec1.super_4 4738297 104 + 6179234 UGUAGAUGAGGAAUGCGAAGAAAUUCCUUAUCACCAUCGCUGAAAAGAAAAAUACUUUUACAAAGUCGCGACUUUGAGAUUCUUUUCAGAUAUGAGGCUAUAUU---------- ....((((((((((........))))))))))..(((..(((((((((((((....))).((((((....))))))...))))))))))..)))..........---------- ( -30.40, z-score = -4.08, R) >droSim1.chr3R 25558979 104 + 27517382 UGUAGAUGAGGAAUGCGAAGAAAUUCCUUAUCACCAUCGCUGAAAAGAAAAAUACUUUUACAAAGUCGCGACAUUGAGAUUCUUUUCAGAUAUGAGGCUAUAUU---------- ....((((((((((........))))))))))..(((..(((((((((((((....))).(((.((....)).)))...))))))))))..)))..........---------- ( -26.30, z-score = -2.83, R) >consensus UGUAGAUGAGGAAUGCGAAGAAAUUCCUUAUCACCAUCGCUGAAAAGAAAAAUACUUUUACAAAGUCGCGACAUUGAGAUUCUUUUCAGAUAUGAGGCUAUAUU__________ ....((((((((((........))))))))))..(((..(((((((((((((....))).(((.((....)).)))...))))))))))..))).................... (-16.58 = -18.70 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:17 2011