| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,889,417 – 25,889,530 |
| Length | 113 |
| Max. P | 0.802697 |
| Location | 25,889,417 – 25,889,530 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.10 |
| Shannon entropy | 0.47027 |
| G+C content | 0.43327 |
| Mean single sequence MFE | -31.58 |
| Consensus MFE | -14.60 |
| Energy contribution | -15.92 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25889417 113 - 27905053 -------UCUAGGAGCUCAGCUCGUUCAGGUGCCUCCAGGAAAAUGUAAAUCGCUAGCGGCAUUCGGCCACCGAUUCUAACUGGUUUUUGUUUUGUUUACUUGAAUGAGCUAGAGCUCUC -------....(((((((((((((((((((((((....))((((((.(((((((.....))..((((...))))........))))).))))))...)))))))))))))).))))))). ( -41.90, z-score = -3.59, R) >droEre2.scaffold_4820 8359763 102 + 10470090 --------UUAAGAGCUUAGCUCUUUCAGGUACUUUC-GGAAAAUGUAGAUCUUUAGUGGUAUUCUGCAGCCGAUUCGAACUGCUUUCCAUUUUGUUUAUUGCAAUGAGCA--------- --------..((((((...)))))).(((......((-((....((((((.((.....))...)))))).))))......)))..........(((((((....)))))))--------- ( -22.80, z-score = -0.26, R) >droYak2.chr3R 26818780 114 - 28832112 UCUAAGAGCUCAGAGCUCAGCUCUUUCAGGUGCUUUCGGUAGAACGUAGUUAGUUAGUGGCAUUCUGCAACUGAUUCAAACUGGUUUUCCAUUUGUUUACUCAAAUGACCUCUU------ ...(((((((........)))))))..((((......((.(((((.((((((((((((.((.....)).)))))))..))))))))))))(((((......))))).))))...------ ( -29.10, z-score = -1.00, R) >droSec1.super_4 4735426 98 - 6179234 ----------------UCAGCUCGUUCAGGUGCACCCAGGAAAAUGUAGAUCGCUAGUGGCAUUCUGCCACCGAUUCUAACUGGUUUUAGUUUUGUUUACUUGAAUGAGC----ACUC-- ----------------...(((((((((((((.((((((.......(((((((...(((((.....)))))))).)))).))))..........)).)))))))))))))----....-- ( -35.10, z-score = -3.97, R) >droSim1.chr3R 25556046 108 - 27517382 ------UCUAGAGAGCUCAGCUCGUUCAGGUGCCUCCAGGAAAAUGUAGAUCGCUAGUGGCAUUCUGCCACCGAUUCUAACUGGUUUUCGUUUUGUUUACUUAAAUGAGC----ACUC-- ------.............(((((((.(((((.....(.((((((.(((((((...(((((.....)))))))).))))....)))))).)......))))).)))))))----....-- ( -29.00, z-score = -0.93, R) >consensus ________CUAAGAGCUCAGCUCGUUCAGGUGCCUCCAGGAAAAUGUAGAUCGCUAGUGGCAUUCUGCCACCGAUUCUAACUGGUUUUCGUUUUGUUUACUUAAAUGAGC_____CUC__ ...................(((((((.(((((......(((((..((.(((((...(((((.....))))))))))...))...)))))........))))).))))))).......... (-14.60 = -15.92 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:16 2011