| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,887,045 – 25,887,141 |
| Length | 96 |
| Max. P | 0.737577 |
| Location | 25,887,045 – 25,887,141 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.62 |
| Shannon entropy | 0.45109 |
| G+C content | 0.36446 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -13.70 |
| Energy contribution | -14.70 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.737577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25887045 96 + 27905053 -------------UUAG----UCUUACUGUACCAUAUUCAAUAUAUUUGUCUAUUAAUUUUC-UUUCUCUGUAUGAAAUUGAACUUGAUGCAGCGAGAGAGACGUAUAUAAGCG -------------...(----.((((.(((((.(((..(((.....)))..)))....((((-((((.((((((.((.......)).)))))).)))))))).)))))))))). ( -21.10, z-score = -2.03, R) >droEre2.scaffold_4820 8357374 111 - 10470090 --UUAGCCGCAAUUUGUAAUCCUUCCCUUUCCCAAAUUCAAUAUAUUUGUGUACCU-UUUUUGUUUCUCUGUAUGGAAUUAAGCAUGUUGCAGCGAGCGAGACGGAUAUAAGCA --......((((((((..(..........)..))))))........((((((.((.-.(((((((.(.(((((...............))))).)))))))).)))))))))). ( -15.96, z-score = 1.22, R) >droYak2.chr3R 26816562 108 + 28832112 --CUAGUC----UUUGAAACCCUUUCCUAUUCCAAUUUUACUAUAUUUGUGUACCAAUUUUUGUUUCUCUGUAUGGAAUUAAGCUUGUUGCAGCGAGGGAGACGGAUAUAGGCA --......----.............((((((((.....(((.......)))...........((((((((...((.(((.......))).))...))))))))))).))))).. ( -20.00, z-score = 0.44, R) >droSec1.super_4 4733082 113 + 6179234 CCAAGGUAUCACUUUGAAACCCCUUCCUACACGAAAUUCAAUAUAUUUGCCUAUGAAUUUUC-UCUCUCUGUAUGAAAUUGAACUUGAUGCAGCGAGAGAGACGGAUAUAAGCG ((.(((((.....(((((.....(((......))).)))))......)))))......((((-((((.((((((.((.......)).)))))).)))))))).))......... ( -26.00, z-score = -2.64, R) >droSim1.chr3R 25553647 113 + 27517382 CCAAGCUAUUACUUUGAAACCCCUUCCAACACGAAAUUCAAUAUAUUUGUCUAUGAAUUUUC-UCUCUCUGUAUGAAAUUGAACUUGAUGCAGCGAGAGAGACGGAUAUAAGCG ....(((......(((((.....(((......))).)))))((((((((((.........((-((((.((((((.((.......)).)))))).))))))))))))))))))). ( -27.30, z-score = -3.55, R) >consensus __AAAGUA__A_UUUGAAACCCCUUCCUAUACCAAAUUCAAUAUAUUUGUCUAUCAAUUUUC_UUUCUCUGUAUGAAAUUGAACUUGAUGCAGCGAGAGAGACGGAUAUAAGCG .........................................(((((((((((...........((((.((((((.((.......)).)))))).)))).))))))))))).... (-13.70 = -14.70 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:15 2011