| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,882,496 – 25,882,601 |
| Length | 105 |
| Max. P | 0.961055 |
| Location | 25,882,496 – 25,882,601 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.58 |
| Shannon entropy | 0.35917 |
| G+C content | 0.38629 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -24.38 |
| Energy contribution | -23.78 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25882496 105 + 27905053 -----UUUAAAUGUUUUAAUAAAUGGCUAUAAUU--UUAGCUAUUUUAUAACUACUCAUGUCCGUUGUGAGCCGAGCUGGCAUCUCUGGCGGCGCACAGCUGUUUGAGAAGC -----.......(((.....(((((((((.....--.)))))))))...)))..((((...(.((((((.(((..((..(.....)..))))).)))))).)..)))).... ( -31.70, z-score = -2.47, R) >droEre2.scaffold_4820 8352871 109 - 10470090 -CCUAUUUACAUCUAUAAAUAAAUGGCUAUAUUU--UUGGCUAUAUUUAAUAUACCUUUUGCUGUUAUAAGCCGAAUUGGCAUCCCUAACGGCGCACAGCUGUUUGGGAAGC -..............((((((..((((((.....--.))))))))))))...........(((.......(((.....))).((((.((((((.....)))))).))))))) ( -28.20, z-score = -1.96, R) >droYak2.chr3R 26805797 112 + 28832112 CCUUUUUUUUAUUUAUAUAUGAAAGGCUAUUUUUGUUUGGCUAUUUUUCAUAAACUUCUUGCUGUUAUAAGCCGAAUUGGCAUCUCUAGGGGCGCACAGCUGUUUGGGAAAC .................((((((((((((........)))))...)))))))..................(((.....))).((((.((.(((.....))).)).))))... ( -21.90, z-score = 0.04, R) >droSec1.super_4 4728532 109 + 6179234 -GCUCUAUAAAUUAAUCAAUAAAUGGCUAUAUUU--UUAGCUAUUUUUCAUCUUCUCUUGUCCGUUGUAAGCCGAGCUGGCAUCUCUGGCGGCGCACAGCUGUUUGAGAAGC -...................(((((((((.....--.))))))))).....((((((....(.(((((..(((..((..(.....)..)))))..))))).)...)))))). ( -29.80, z-score = -1.82, R) >droSim1.chr3R 25549138 109 + 27517382 -GCUCUUUAAAUUUAUUAAUAAAUGGCUAUAUUU--UUAGCUAUUUUUUAUCUUCUCUUGUCCGUUGUAAGCCGAGCUGGCAUCUCUGGCGGCGCACAGCUGUUUGAGAAGC -...............(((.(((((((((.....--.))))))))).))).((((((....(.(((((..(((..((..(.....)..)))))..))))).)...)))))). ( -31.00, z-score = -2.31, R) >consensus _CCUCUUUAAAUUUAUAAAUAAAUGGCUAUAUUU__UUAGCUAUUUUUCAUCUACUCUUGUCCGUUGUAAGCCGAGCUGGCAUCUCUGGCGGCGCACAGCUGUUUGAGAAGC ....................(((((((((........)))))))))........................(((.....))).((((.((((((.....)))))).))))... (-24.38 = -23.78 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:12 2011