| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,876,323 – 25,876,430 |
| Length | 107 |
| Max. P | 0.851738 |
| Location | 25,876,323 – 25,876,430 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 83.43 |
| Shannon entropy | 0.35011 |
| G+C content | 0.36829 |
| Mean single sequence MFE | -19.76 |
| Consensus MFE | -12.96 |
| Energy contribution | -13.38 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25876323 107 + 27905053 --------UUCUUUUCGGUUUUAU-UAUAUGUUUAC--GGCGACUCGGCGUCGUCAUUAAAUAAUAAUCACAAAUUCCACUGGCACGGCGCCAAAAUUAAUCAUCGGUCACUUUCACU --------......(((((...((-(((.((((((.--((((((.....))))))..)))))))))))............((((.....)))).........)))))........... ( -18.10, z-score = -1.01, R) >droSim1.chr3R 25543032 107 + 27517382 --------UUCUUUUCGGUUUUAU-UAUAUGUUUAC--GGCGACUCGGCGUCGUCAUUAAAUAAUAAUCACAAAUUCCACUGGCACGGCGCCAAAAUUAAUCAUCGGUCACUUUCACU --------......(((((...((-(((.((((((.--((((((.....))))))..)))))))))))............((((.....)))).........)))))........... ( -18.10, z-score = -1.01, R) >droSec1.super_4 4722418 107 + 6179234 --------UUCUUUUCAGUUUUAU-UAUAUGUUUAC--GGCGACUCGGCGUCGUCAUUAAAUAAUAAUCACAAAUUCCACUGGCACGGCGCCAAAAUUAAUCAUCGGUCACUUUCACU --------.........((.((((-(((.((...((--((((......))))))...)).)))))))..)).........((((.....))))......................... ( -16.10, z-score = -0.82, R) >droYak2.chr3R 26799406 107 + 28832112 --------UUCCUUUUGGUUUUAU-UAUAUGUUUAC--GGCGACUCGGCGUCGUCAUUAAAUAAUAAUCACAAAUUCCACUGGCACGGCGCCAAAAUUAAUCAUCGGUCACUUUCACU --------..((.((((...((((-(((.((...((--((((......))))))...)).)))))))...))))......((((.....))))............))........... ( -19.40, z-score = -1.18, R) >droEre2.scaffold_4820 8338983 107 - 10470090 --------UUCCUUUUGGUUUUAU-UAUAUGUUUAC--GGCGACUCUUCGUCGUCAUUAAAUAAUAAUCACAAAUUCCACUGGCACGGCGCCAAAAUUAAUCAUCGGUCACUUUCACU --------..((.((((...((((-(((.((...((--(((((....)))))))...)).)))))))...))))......((((.....))))............))........... ( -20.50, z-score = -2.70, R) >droAna3.scaffold_13340 20865961 107 + 23697760 --------UUUCUUUUGGUUUUAU-UAUAUGUUUAC--GGCGACUUUUCGUCGUCAUUAAAUAAUAAUCACAAAUUCCGCUGGCAAGGCGCCAAAAUUAAUCAUCGGUCACUUUCACU --------....(((((((.((((-(((.((...((--(((((....)))))))...)).)))))))...........(((.....))))))))))...................... ( -20.30, z-score = -2.26, R) >dp4.chr2 983545 108 + 30794189 -------UUUUUGUUUCGUUUUAU-UAUAUGUUUAC--GGCGACUUCUCGUCGUCAUUAAAUAAUAAUCACAAAUUCCGCUGGCAAGUGGCCAAUAUUAAUCAUCGGUCACUUUCACU -------..(((((......((((-(((.((...((--(((((....)))))))...)).)))))))..)))))......(((.((((((((.............))))))))))).. ( -23.12, z-score = -3.46, R) >droPer1.super_7 3769830 108 + 4445127 -------UUUUUGUUUCGUUUUAU-UAUAUGUUUAC--GGCGACUUCUCGUCGUCAUUAAAUAAUAAUCACAAAUUCCGCUGGCAAGUGGCCAAUAUUAAUCAUCGGUCACUUUCACU -------..(((((......((((-(((.((...((--(((((....)))))))...)).)))))))..)))))......(((.((((((((.............))))))))))).. ( -23.12, z-score = -3.46, R) >droWil1.scaffold_181130 5274249 118 + 16660200 GUGUAUAUCUAUGUAUGUAUAUAUCUGUGGUCAUACACGGCGACUUUUCGUCGUCAUUAAAUAAUAAUCAUGAAUUCCUCUGGCAUAAUGCCAAUAUUAAUCAUCGGGCACUUUCACU ((((((..((((..(((....)))..))))..))))))((((((.....))))))............((((((.......((((.....)))).......)))).))........... ( -24.44, z-score = -1.62, R) >droMoj3.scaffold_6540 7759112 93 + 34148556 -------------------------UAUAUUUUUGCCUGGCGACAUUUCGUCGUCAUUAAAUAAUAAUCACAAAUUCCUCUGGAACUUUGCCAAAAUUAAUCAUCGGACACUUUCACU -------------------------........(((((((((((.....)))))))..............((((((((...)))).))))...............)).))........ ( -14.30, z-score = -1.73, R) >droVir3.scaffold_12855 3458456 109 + 10161210 --------UUAUUUAUAGUUUCAA-UGGAUAUUUGCCUGGCGACAUUUCGUCGUCAUUAAAUAAUAAUCACGAAUUCCGCUGGAACUUUGCCAACAUUAAUCAUCGGACACUUUCACU --------........(((((((.-((((.(((((...((((((.....))))))((((.....))))..))))))))).)))))))............................... ( -19.90, z-score = -1.32, R) >consensus ________UUCUUUUUGGUUUUAU_UAUAUGUUUAC__GGCGACUUUUCGUCGUCAUUAAAUAAUAAUCACAAAUUCCACUGGCACGGCGCCAAAAUUAAUCAUCGGUCACUUUCACU .............................((((((...((((((.....))))))..)))))).................((((.....))))......................... (-12.96 = -13.38 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:12 2011