| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,806,672 – 25,806,783 |
| Length | 111 |
| Max. P | 0.783539 |
| Location | 25,806,672 – 25,806,783 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 74.00 |
| Shannon entropy | 0.44440 |
| G+C content | 0.39428 |
| Mean single sequence MFE | -18.69 |
| Consensus MFE | -8.96 |
| Energy contribution | -9.68 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25806672 111 + 27905053 UCUAAUAUAAAGGUAUUAUUUCAGGAUUCAAAUUAA-AUGCAAAUU---ACUAAAGGCAAGACCACCCCCUCCCCCCUUUAGAAACGCCCCUGAAAUUAACCACACUACCAAUAG ...........(((...((((((((..........(-((....)))---.(((((((...((........))...))))))).......))))))))..)))............. ( -19.50, z-score = -3.63, R) >droSim1.chr3R 25474929 102 + 27517382 UCUAAUAUAGAGGUAUAAUUUCAGGAUUCGAAUUAA-AUGCAAAUU---ACUAAAGGCAAGA--ACCCCCUUUCGCC-------ACGCCCCUGAAAUUAACCACACUACCAAUAG ...........(((.((((((((((...((.....(-((....)))---......(((.(((--......))).)))-------.))..)))))))))))))............. ( -19.40, z-score = -2.93, R) >droSec1.super_4 4652058 104 + 6179234 UCUAAUAUAGAGGUAUAAUUUCAGGAUUCAAAUUAA-AUGCAAAUU---AAUAAAGGCAAGAACCCCCCCUUUCGCC-------ACGCCCCUGAAAUUAACCACACUACCAAUAG ...........(((.((((((((((......(((((-.......))---)))...(((.(((........))).)))-------.....)))))))))))))............. ( -19.70, z-score = -3.46, R) >droYak2.chr3R 8163611 108 - 28832112 UUUAAUACAAAGGUAGCAUUUCAGGAUUCAAAUUCAUAUGCUAAUUGAAACUAAUGCUCGAAGCAACCCCUUUUGCC-------ACGCCCCUGAAAGGAACCACAUCAGCAAUAG .......(((...((((((....((((....))))..)))))).)))...(((.((((.((.......((((((...-------........)))))).......)))))).))) ( -16.74, z-score = -0.16, R) >droEre2.scaffold_4820 8268881 96 - 10470090 UCUAAUACAAAGGUAUCAUGACAGGAUUCAAAUUGAUAUGUAAAUGCAAAUUAAUGCUCGAAGGA--CCCCCUUGCC-------ACGCCCCUGCAAUGAGGCGCA---------- ............((.((((..((((......((((((.(((....))).)))))).....((((.--...))))...-------.....))))..)))).))...---------- ( -18.10, z-score = 0.37, R) >consensus UCUAAUAUAAAGGUAUAAUUUCAGGAUUCAAAUUAA_AUGCAAAUU___ACUAAAGGCAAGAGCACCCCCUUUCGCC_______ACGCCCCUGAAAUUAACCACACUACCAAUAG ...........(((.((((((((((................................................................)))))))))))))............. ( -8.96 = -9.68 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:06 2011