| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,805,643 – 25,805,755 |
| Length | 112 |
| Max. P | 0.602897 |
| Location | 25,805,643 – 25,805,755 |
|---|---|
| Length | 112 |
| Sequences | 8 |
| Columns | 131 |
| Reading direction | forward |
| Mean pairwise identity | 72.88 |
| Shannon entropy | 0.53022 |
| G+C content | 0.45945 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -9.62 |
| Energy contribution | -10.81 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25805643 112 + 27905053 UUGCUGCUGCU--AUUGACUGCCUGUCUGACCAAUUAUGGUGCAAUUAACACACUUGAUUGCCUGGAAUCUCUGACUCGUUUGCCGUUAACGAUUCCACCUG-UGC-------------UCUUGCACC--- ..((....)).--...(((.....)))..((((....))))((((((((.....)))))))).(((((((..((((.........))))..)))))))...(-(((-------------....)))).--- ( -27.00, z-score = -2.87, R) >droAna3.scaffold_13340 20810748 126 + 23697760 CUAUGGCUGUU--AUUGACUGCCUGUCUGACCAAUUAUGGUGCAAUUAACACACUUGAUUGCUCGGAAUCUCUGACUCGUUUGCCGUUAACUGCAUCUCCUACUGCUGCCAGGCACCUGUCUUACACC--- ....((.(((.--...(((((((((.(.(.........((((((.(((((.((..(((....((((.....)))).)))..))..))))).))))))........).).))))))...)))..)))))--- ( -29.63, z-score = -1.65, R) >droEre2.scaffold_4820 8267834 118 - 10470090 UUGCUACUGCC--AUUGACUGCCUGUCUGACCAAUUAUGGUGCAAUUAACACACUUGAUUGCCUGGAAUCUCUGACUCGUUUGCCGUUAACGACUCCACCUG-UGCAGUU-GC------UUUUGCACC--- ..((.((((((--(..(((.....)))..((((....))))((((((((.....)))))))).((((.((..((((.........))))..)).))))..))-.))))).-))------.........--- ( -27.10, z-score = -1.70, R) >droYak2.chr3R 8162506 122 - 28832112 UUGUUGCUGCU--AUUGACUGCCUGUCUGACCAAUUAUGGUGCAAUUAACACACUUGAUUGCCUGGAAUCUCUGACUCGUUUGCCGUUAACGACUCCACCUG-UGCAGUUUGC------UUUUGCAGCGCC .....(((((.--...((((((.......((((....))))((((((((.....)))))))).((((.((..((((.........))))..)).))))....-.))))))...------....)))))... ( -31.40, z-score = -1.70, R) >droSec1.super_4 4651005 112 + 6179234 UUGCAGCUGCU--AUUGACUGCCUGUCUGACCAAUUAUGGUGCAAUUAACACACUUGAUUGCCUGGAAUCUCUGACUCGUUUGCCGUUAACGACUCCACCUG-UGC-------------CCUUGCACC--- .(((((..((.--...(((.....)))..((((....))))((((((((.....)))))))).((((.((..((((.........))))..)).))))....-.))-------------..)))))..--- ( -23.20, z-score = -0.99, R) >droSim1.chr3R 25473880 112 + 27517382 UUGCUGCUGCU--AUUGACUGCCUGUCUGACCAAUUAUGGUGCAAUUAACACACUUGAUUGCCUGGAAUCUCUGACUCGUUUGCCGUUAACGACUCCACCUG-UGC-------------UCUUGCACC--- ..((....)).--...(((.....)))..((((....))))((((((((.....)))))))).((((.((..((((.........))))..)).))))...(-(((-------------....)))).--- ( -23.30, z-score = -1.57, R) >droVir3.scaffold_12822 753469 110 + 4096053 -UGCUGCCGUUUUAUUGACAGCUU-CCUGACCAAUUAUGGUGCAAUUAACACACCUGAUUGGUUAACAUCUCUGACUCUGACUCGGUUAACUGCAGUACACA----------------CUCAUGCACA--- -((((((.(((..((((((((..(-(.((((((((((.((((.........))))))))))))))........))..)))..))))).))).))))))....----------------..........--- ( -27.20, z-score = -2.05, R) >droWil1.scaffold_181130 7706281 90 - 16660200 -------------------------UUUGCCCAAUUAUGGUGCAAUUAACACACUUGAUUGCAUAAAAUCUUCGACUCCUUCUCCUUU--UUGCCACAACCA-----------GGUAAUCUCUAUAUA--- -------------------------.(((((......((((((((((((.....))))))))...........((.....))......--..))))......-----------)))))..........--- ( -13.80, z-score = -1.95, R) >consensus UUGCUGCUGCU__AUUGACUGCCUGUCUGACCAAUUAUGGUGCAAUUAACACACUUGAUUGCCUGGAAUCUCUGACUCGUUUGCCGUUAACGACUCCACCUG_UGC_____________UCUUGCACC___ ..............(((((.((.......((((....))))((((((((.....))))))))....................)).)))))......................................... ( -9.62 = -10.81 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:05 2011