| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,786,624 – 25,786,718 |
| Length | 94 |
| Max. P | 0.727404 |
| Location | 25,786,624 – 25,786,718 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.02 |
| Shannon entropy | 0.44719 |
| G+C content | 0.44691 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -13.14 |
| Energy contribution | -12.74 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25786624 94 + 27905053 UAUAUGUGGCCUCCG---UUUGGCCAGCAAAAAAAACCAAAGUUAUUCGCAGAAUGGAUUUUCGAUGCGUCAGACGCAGCCAUAUUCCCAUAUCCAC------- ...(((((((...((---((((((..(((..((((.(((...............))).))))...)))))))))))..)))))))............------- ( -21.76, z-score = -1.53, R) >droAna3.scaffold_13340 20788709 75 + 23697760 --UAUAUGGCAGCUA---CUAUAACAGCUG-------CAGAAUCAAGCA-AAAAUGUAUUUUCGAUGCGUCAGUCGCAGUCGUAUCAU---------------- --......((((((.---.......)))))-------).(((....(((-....)))...)))((((((.(.......).))))))..---------------- ( -18.30, z-score = -1.63, R) >droYak2.chr3R 8142571 99 - 28832112 --UUUGUGGCCUCUGGUUUUUGGGCUGCAAAAAG---CUGAGUCGUUUGCAGAAUGGAUUUUCGAUGCGUCAGACGCAGCCAUAUUCCCAUAUCCAUAUCCCAU --...((((....(((....(((((((((((..(---(...))..))))))).((((........((((.....)))).))))...))))...)))....)))) ( -27.30, z-score = -0.70, R) >droSec1.super_4 4632476 91 + 6179234 UAUAUGUGGCCUCCG---UUUGGCCAGCAAAAAG---CAAAGUUAUUCGCAGAAUGGAUUUUCGAUGCGUCAGACGCAGCCAUAUUCCCAUAUCCAC------- ...(((((((...((---((((((..((.....)---)..........((((((......)))..)))))))))))..)))))))............------- ( -23.30, z-score = -1.72, R) >droSim1.chr3R 25456817 91 + 27517382 UAUAUGUGGCCUCCG---UUUGGCCAGCAAAAAG---CAAAGUUAUUCGCAGAAUGGAUUUUCGAUGCGUCAGACGCAGCCAUAUUCCCAUAUCCAC------- ...(((((((...((---((((((..((.....)---)..........((((((......)))..)))))))))))..)))))))............------- ( -23.30, z-score = -1.72, R) >consensus UAUAUGUGGCCUCCG___UUUGGCCAGCAAAAAG___CAAAGUUAUUCGCAGAAUGGAUUUUCGAUGCGUCAGACGCAGCCAUAUUCCCAUAUCCAC_______ ...(((((((............................((((((((((...))))).)))))...((((.....)))))))))))................... (-13.14 = -12.74 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:01 2011