| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,778,076 – 25,778,134 |
| Length | 58 |
| Max. P | 0.807337 |
| Location | 25,778,076 – 25,778,134 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 77.63 |
| Shannon entropy | 0.39776 |
| G+C content | 0.50012 |
| Mean single sequence MFE | -17.37 |
| Consensus MFE | -14.41 |
| Energy contribution | -13.70 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25778076 58 + 27905053 AUGGUGCUACGGGAGUGUUUUUUACGGGCCAGCGCGGCA----AGUUAAUAUACCCGUGUUC----- .......((((((.(((((....((..(((.....))).----.)).))))).))))))...----- ( -18.20, z-score = -1.17, R) >droSim1.chr3R 25448236 57 + 27517382 AUGGUGCUACGGGAGUGUUUUUUACGGGCCAGCGCGGCA----AGUUAAUAUCCCCGUGUU------ .......((((((..((((....((..(((.....))).----.)).))))..))))))..------ ( -18.50, z-score = -1.03, R) >droSec1.super_4 4623926 57 + 6179234 AUGGUGUUACGGGAGUGUUUUUUACGGGCCAGCGCGGCA----AGUUAAUAUCCCCGUGUU------ .......((((((..((((....((..(((.....))).----.)).))))..))))))..------ ( -18.60, z-score = -1.50, R) >droYak2.chr3R 8133650 57 - 28832112 AUGGUGCUACGGGAGUGUUUUUUACGGGCCAUCGCGGCA----ACUUAAUAUCUCCGUGUU------ .......(((((..(((((........(((.....))).----....)))))..)))))..------ ( -14.32, z-score = -0.42, R) >droEre2.scaffold_4820 8240468 63 - 10470090 AUGGUGCUACGGGAGUGUUUUUUACGGGCCAUCGCGGCA----ACUUAAUAUCCCCGUGUUCCCGUU ((((.((.(((((..((((........(((.....))).----....))))..)))))))..)))). ( -18.52, z-score = -0.52, R) >droAna3.scaffold_13340 20780386 60 + 23697760 -ACACGGGACGGAAGUGUUUUU-ACUAGCCACCCGGGUUGGACAUUUAAUAUUUUUUCCGUU----- -..((((((..((((((((...-.((((((.....))))))......)))))))))))))).----- ( -16.10, z-score = -1.59, R) >consensus AUGGUGCUACGGGAGUGUUUUUUACGGGCCAGCGCGGCA____AGUUAAUAUCCCCGUGUU______ .......((((((.(((((........(((.....))).........))))).))))))........ (-14.41 = -13.70 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:00 2011