| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,753,228 – 25,753,324 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 25,753,228 – 25,753,324 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.20 |
| Shannon entropy | 0.10735 |
| G+C content | 0.52833 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -23.45 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 25753228 96 - 27905053 GCAAUCGCGAAGCCCGUUGUUAUGGGCAUCGCACACGGCAAACAGCGCGGUCCUUUAAACGCUUCGUCGAACACUUUU----CACUCACUCGCUUUAUAG ((....((((.((((((....)))))).))))...((((....((((............))))..)))).........----.........))....... ( -25.70, z-score = -1.58, R) >droSim1.chr3R 25422103 96 - 27517382 GCAAUCGCGAAGCCCGUUGUUAUGGGCAUCGCACACGGCAACCGGCGCGGUCCUUUAAACGCUUCGUCGAACACUUUU----CACUCACUCGCUUUAAAG ((....((((.((((((....)))))).))))..........(((((.(((.........))).))))).........----.........))....... ( -26.50, z-score = -1.17, R) >droSec1.super_4 4599154 96 - 6179234 GCAAUCGCGAAGCCCGUUGUUAUGGGCAUCGCACACGGCAAACGGCGCGGUCCUUUAAACGCUUCGACGAACAUUUUU----CACUCACUCGCUUUAAAG ......((((.((((((....)))))).))))....(((...(((.(((..........))).)))..(((.....))----)........)))...... ( -25.90, z-score = -1.06, R) >droEre2.scaffold_4820 8214294 100 + 10470090 GCAAUCGCGAACCCCGUUGUUAUGGGCAUCGCACACGGCAAACAGCGCGGUCCUUUAAACGCUUCGUCGAACACUUUUCACACACUCACUCGCUGCAAAU ((....((((..(((((....)))))..)))).....))...(((((((..........)))...((.(((.....)))))..........))))..... ( -23.10, z-score = -0.51, R) >consensus GCAAUCGCGAAGCCCGUUGUUAUGGGCAUCGCACACGGCAAACAGCGCGGUCCUUUAAACGCUUCGUCGAACACUUUU____CACUCACUCGCUUUAAAG ((....((((.((((((....)))))).))))...((((....((((............))))..))))......................))....... (-23.45 = -23.70 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:59 2011