| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,744,999 – 25,745,108 |
| Length | 109 |
| Max. P | 0.939082 |
| Location | 25,744,999 – 25,745,108 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 69.67 |
| Shannon entropy | 0.58845 |
| G+C content | 0.50590 |
| Mean single sequence MFE | -31.98 |
| Consensus MFE | -13.96 |
| Energy contribution | -17.02 |
| Covariance contribution | 3.06 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25744999 109 - 27905053 ----GCUCGGUGAUAUGGCUAUGUAGUGAGCUUCCUCGUCCUUCGAGCGGCACGUUCCAUUGUUUGUCCAAUUGGCAACACACUUAUGUAGCACAUCGCUGGGUGCCUCUAAU ----((((((((((...(((((((((((.(((..((((.....)))).)))..(((((((((......))).))).))).))).))))))))..))))))))))......... ( -38.00, z-score = -2.56, R) >droEre2.scaffold_4820 8206256 95 + 10470090 ----GCUCAGUGAUGUAGCUAUGUAGUGAGCUUGCUCGUCCCUCGAGCGGCACGUUCCAUUGUUUGUCCAAUUGGCAACACACUUAUGUUGCCUCUAAU-------------- ----((((((.((((.(((...((.....))..))))))).)).))))((.(((..(....)..)))))....(((((((......)))))))......-------------- ( -27.90, z-score = -1.71, R) >droYak2.chr3R 8103923 113 + 28832112 GUUGAGGCAGUGAUGUAGCUAUGUAGUGAGCUUCCUCGUCCUUCGAGCGGCACGUUCCAUUGUUUGUCCAAUUGGCAACACACUUAUGUAGCAGCUCGCUGGGUGCCUCUAAU ...((((((((((.((.(((((((((((.(((..((((.....)))).)))..(((((((((......))).))).))).))).)))))))).))))))....)))))).... ( -39.10, z-score = -1.88, R) >droSec1.super_4 4586737 109 - 6179234 ----GUUCGGUGAUGUGGCUAUGUACUGAGCUUCCUCGUCCUUCGAGCGGCACGUUCCAUUGUUUGUCCAUUUGGCAACACACUUAUGUAGCACAUCGUUGUGUGCCUCUAAU ----((((((.((((.((((........))))....))))..))))))((((((((.(((((((((((.....))))).)))...))).)))(((....))))))))...... ( -30.70, z-score = -1.05, R) >droSim1.chr3R 25411435 109 - 27517382 ----GCUCGGUGACGUGGCUAUGUAGUGAGCUUCCUCGUCCUUCGAGCGGCACGUUUCAUUGUUUGUCCAAUCGGCAACACACUUAUGUAGCACAUCGCUGAGUGCCUCUAAU ----(((((((((.(((.((((((((((.(((..((((.....)))).))).........((((.(((.....)))))))))).)))))))))).)))))))))......... ( -37.10, z-score = -2.28, R) >droWil1.scaffold_181130 7624979 83 + 16660200 ------------------------GCUGAGCCACCGAAUGUGGCAACCGGCACGUUUAAGUG-CCACCCCCCCUGCUACCCCUUUCUGUU-----UGUCUGUGUUGUUCUAAA ------------------------((...(((((.....)))))....(((((......)))-)).........))..............-----.................. ( -19.10, z-score = -1.40, R) >consensus ____GCUCGGUGAUGUGGCUAUGUAGUGAGCUUCCUCGUCCUUCGAGCGGCACGUUCCAUUGUUUGUCCAAUUGGCAACACACUUAUGUAGCACAUCGCUGGGUGCCUCUAAU .......((((((....(((((((((((.(((..((((.....)))).)))..(((((((((......)))).)).))).))).))))))))...))))))............ (-13.96 = -17.02 + 3.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:58 2011