Locus 12111

Sequence ID dm3.chr3R
Location 25,727,716 – 25,727,766
Length 50
Max. P 0.846540
window16652

overview

Window 2

Location 25,727,716 – 25,727,766
Length 50
Sequences 3
Columns 50
Reading direction forward
Mean pairwise identity 100.00
Shannon entropy -0.00000
G+C content 0.46000
Mean single sequence MFE -13.10
Consensus MFE -13.10
Energy contribution -13.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.89
SVM RNA-class probability 0.846540
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 25727716 50 + 27905053
GAUUAUUCAUGGUCGGCCGGCCAGCCAGACGAGAUAUAUAUUUCGGAUAA
..((((((.((((.((....)).))))...(((((....))))))))))) ( -13.10, z-score =  -1.38, R)
>droSim1.chr3R 25394190 50 + 27517382
GAUUAUUCAUGGUCGGCCGGCCAGCCAGACGAGAUAUAUAUUUCGGAUAA
..((((((.((((.((....)).))))...(((((....))))))))))) ( -13.10, z-score =  -1.38, R)
>droSec1.super_4 4569429 50 + 6179234
GAUUAUUCAUGGUCGGCCGGCCAGCCAGACGAGAUAUAUAUUUCGGAUAA
..((((((.((((.((....)).))))...(((((....))))))))))) ( -13.10, z-score =  -1.38, R)
>consensus
GAUUAUUCAUGGUCGGCCGGCCAGCCAGACGAGAUAUAUAUUUCGGAUAA
..((((((.((((.((....)).))))...(((((....))))))))))) (-13.10 = -13.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:57 2011