| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,705,747 – 25,705,815 |
| Length | 68 |
| Max. P | 0.562376 |
| Location | 25,705,747 – 25,705,815 |
|---|---|
| Length | 68 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 75.51 |
| Shannon entropy | 0.38741 |
| G+C content | 0.53179 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -14.28 |
| Energy contribution | -14.12 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25705747 68 + 27905053 AACGGCCCCAUACGUUGGAGGUCGUAAUAGUUUCGAGCUGAGCCCGAUCAUCCAAGAUCGCCCAUUGC---------------- .(((((((((.....))).))))))..((((.....)))).(..(((((......)))))..).....---------------- ( -19.30, z-score = -1.54, R) >droSim1.chr3R 25381263 68 + 27517382 AACGGCUCCAUACGUUGGAGGUCGUAAUAGUUUCGAGCUGAGCCCGAUCAUCCAAGAUCGCCCCUUGC---------------- .(((((((((.....)))).)))))...........((.(((..(((((......)))))...)))))---------------- ( -17.40, z-score = -0.52, R) >droSec1.super_4 4556754 68 + 6179234 AACGGCCCCAUACGUCGGAGGUCGUAAUAGUUUCGAGCUGAGCCCGAUCAUCCAAGAUCGCCCAUUGC---------------- .((((((((.......)).))))))..((((.....)))).(..(((((......)))))..).....---------------- ( -17.30, z-score = -0.63, R) >droYak2.chr3R 8072991 84 - 28832112 AACGGCCUUAUAAGUUGGAGGUCGUAAUAGUUUCGAACUGAGCUCCACUUUGGAUGAUCGCCCAUCGCGAUCUCGUCGCUGAGC .((((((((........))))))))............((.((((((.....))).((((((.....)))))).....))).)). ( -26.90, z-score = -1.46, R) >droEre2.scaffold_4820 8174924 84 - 10470090 AACGGCCCCAUAAGUUGGAGGUCGUAAUAGUUUCAAACUGAGUUCGACUUUGGAUGAUCGCUCAUCGCGAUCUCGGCGUUGAGC .(((((((((.....))).))))))..((((.....)))).(((((((.((((..((((((.....)))))))))).))))))) ( -30.50, z-score = -2.67, R) >consensus AACGGCCCCAUACGUUGGAGGUCGUAAUAGUUUCGAGCUGAGCCCGAUCAUCCAAGAUCGCCCAUUGC________________ .(((((((((.....))).))))))..((((.....)))).(..(((((......)))))..)..................... (-14.28 = -14.12 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:54 2011