| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,685,433 – 25,685,547 |
| Length | 114 |
| Max. P | 0.873944 |
| Location | 25,685,433 – 25,685,547 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.92 |
| Shannon entropy | 0.42069 |
| G+C content | 0.42815 |
| Mean single sequence MFE | -33.09 |
| Consensus MFE | -22.93 |
| Energy contribution | -20.73 |
| Covariance contribution | -2.20 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25685433 114 + 27905053 AGGCCGGUUUUACGUUCCUGUUCUCCAAGGAACGGGGAGUUGAAGCAAGGCCUGGUUUUU-ACGUGAAUAUCUAGUCAUGAUUAAGGAUCCGUAUUUCCGUGCUUCUGCUGAAUU----- (((((.((((((..((((((((((....))))))))))..))))))..)))))(((((((-((((((........)))))..)))))))).....(((...((....)).)))..----- ( -34.70, z-score = -1.40, R) >droEre2.scaffold_4820 8154674 116 - 10470090 AACCCGGUUUUACGUUUUUGUUCUCCCAGGAACAGGGAGUUGGAGCAAAGCGUGGGUCCUCGCGUGAAUAUCUAGUCAUGAUAAAAAUACAAUAUUACCAUGUUAUUACAGUGCGG---- .((((((((((..(((((....(((((.......)))))..)))))))))).)))))((.(((((((.((((.......)))).......(((((....))))).)))).))).))---- ( -26.60, z-score = 0.10, R) >droYak2.chr3R 8052656 119 - 28832112 AAGCCGGUUUCAUGUUUCUGUUCUCCCUGGAAUAGGGAGUUGAAGCAGAGCCUGGGUCUUUGCGUGUAUAUCUAGUCAUGCUUAAAACUUAAUAUUGUCAUGCU-UUACAAUGCGGAACG ...((((.(((.((((((....(((((((...)))))))..))))))))).))))((.((((((((((.....((.(((((...............).))))))-.))).))))))))). ( -33.26, z-score = -1.49, R) >droSec1.super_4 4536496 120 + 6179234 AGGCCGGUUUUAUGUUCCUGUUCUUCGAGGAACGGGAAGUUGAAGCAAGGUCUGGUUUUUCAAGUGAAUAUCUAGUCAUGAUUAAUGAUUCGUAAUUCUAUGCUCCUACAGUGCGGAAUG (((((.((((((..((((((((((....))))))))))..))))))..)))))(((..(((....))).))).((((((.....))))))....(((((..(((.....)))..))))). ( -33.90, z-score = -1.75, R) >droSim1.chr3R 25360930 120 + 27517382 AGGCCGGUUUUAUGUUCCUGUUCUUCGAGGAACGGGGAGUUAAAGCAAGGCCUGGUUUUUCAAGUGAAUAUCUAGUCAUGAUUAAUGAUUCGUAAUUCUAUGUUCCUAUAGUGCGGAAUG (((((.((((((..((((((((((....))))))))))..))))))..)))))............((((..(.((((((.....)))))).)..))))...(((((........))))). ( -37.00, z-score = -2.87, R) >consensus AGGCCGGUUUUAUGUUCCUGUUCUCCCAGGAACGGGGAGUUGAAGCAAGGCCUGGUUUUUCACGUGAAUAUCUAGUCAUGAUUAAAGAUUCGUAUUUCCAUGCUCCUACAGUGCGGAA_G ...(((((((((..((((((((((....))))))))))..))))))..(((.(((..............(((.......)))...............))).))).........))).... (-22.93 = -20.73 + -2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:50 2011