| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,684,849 – 25,684,969 |
| Length | 120 |
| Max. P | 0.577036 |
| Location | 25,684,849 – 25,684,969 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.75 |
| Shannon entropy | 0.13053 |
| G+C content | 0.51667 |
| Mean single sequence MFE | -41.26 |
| Consensus MFE | -34.80 |
| Energy contribution | -37.16 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25684849 120 + 27905053 GGGCCGCUUGACUUGAACUGGGUAUUUCGCUGGCGUGAACAAGCUUAAUGCAUAGUCCAUCCCAUGCGUCGGCUAAUUGCUCAAUGCAAUCCUCUAGGAAGAUCUUAGAGAAGCCGUCCU (((((((.((...((.((((.(((((..(((...(....).)))..))))).)))).))...)).)))..((((.(((((.....))))).(((((((.....))))))).)))))))). ( -40.20, z-score = -1.94, R) >droSim1.chr3R 25360347 120 + 27517382 GGACCGCUUGACUUGGACUGGGUAUUUCGCUGGCGUGGACAAGCUUGAUGCGUAGUCCAUCCCAUGCGUCGGCUAAUUGCUUAAUGCAAUCCUCUAGGAAGAUCUUGGAGAAGCCGUCCU (((((((.((...(((((((.(((((..(((..........)))..))))).)))))))...)).)))..((((.(((((.....))))).(((((((.....))))))).)))))))). ( -49.20, z-score = -3.57, R) >droSec1.super_4 4535910 120 + 6179234 GGACCGCUUGACUUGGACUGGGUAUUUCGCUGGCGUGGACAAGCUUGAUGCGUAGGCCAUCCCAUGCAUCGGCUAAUUGCUUAAUGCAAUCCUCUAGGAAGAUCUUGGAGAAGCCGUCCU ((((.(((((((((.....))))..(((((....))))))))))..(((((((.((....)).)))))))((((.(((((.....))))).(((((((.....))))))).)))))))). ( -44.70, z-score = -2.15, R) >droYak2.chr3R 8052054 120 - 28832112 GGUCCGCUUGACUAGGACUGGGUAUUUCGCUGGCGUGAACAAGCUUGAUGCGUAAUCCAUCCCAUUCGUCGGCUAAGUACUUAAUGCAAUCCUCUAGGAAGAUCUUGGAGAAGCCGUCCU ((((.....))))((((((((((((((.(((((((....)......((((.(....)))))......)))))).)))))))))........(((((((.....))))))).....))))) ( -36.10, z-score = -0.78, R) >droEre2.scaffold_4820 8154073 120 - 10470090 GGGCCGCUUGACUUGGACUGGGUAUUUCGCUGGCGUGGACAAGCUUGAUGCGUACUCCAUUCCAUGCGUCGGCCAAUUGCUCAAUACAAUCCUCGAGGAAGAUCUUGGAGAAGCCAUCCU (((..((((((.(((...((((((.((.(((((((((((...((.....))....))).......)))))))).)).))))))...)))))(((.(((.....))).)))))))..))). ( -36.11, z-score = 0.26, R) >consensus GGACCGCUUGACUUGGACUGGGUAUUUCGCUGGCGUGGACAAGCUUGAUGCGUAGUCCAUCCCAUGCGUCGGCUAAUUGCUUAAUGCAAUCCUCUAGGAAGAUCUUGGAGAAGCCGUCCU (((((((.((...(((((((.(((((..(((..........)))..))))).)))))))...)).)))..((((.(((((.....))))).(((((((.....))))))).)))))))). (-34.80 = -37.16 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:49 2011