| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,683,188 – 25,683,254 |
| Length | 66 |
| Max. P | 0.945749 |
| Location | 25,683,188 – 25,683,254 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 83.94 |
| Shannon entropy | 0.29099 |
| G+C content | 0.44611 |
| Mean single sequence MFE | -18.53 |
| Consensus MFE | -14.36 |
| Energy contribution | -15.40 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25683188 66 - 27905053 AGCGUGACAACGUGUGGGGUAUUUAUGCUCUACUUUGCUGUGGUCACACUGUUUCCACAGCAUUUU .((((....))))((((((((....))))))))..((((((((..((...))..)))))))).... ( -24.70, z-score = -3.52, R) >droSim1.chr3R 25357892 65 - 27517382 -GAGUGGCAACGUGUGGAGUAUUUCUGCUCUACUUUGCUGUGGUCACACUGUUUACACAGCAUUUU -....(....)..((((((((....))))))))..(((((((.............))))))).... ( -20.12, z-score = -1.79, R) >droSec1.super_4 4533457 65 - 6179234 -GAGUGGCAACUUGUGGAGUAUUUCUGCUCUACUUUGCGGUGGUCACACUGUUUCCACAGCAUUUU -..((((......((((((((....))))))))...((((((....))))))..))))........ ( -21.50, z-score = -2.53, R) >droYak2.chr3R 8049224 65 + 28832112 -GCCUGUCAACGUGCUUGGUAAUUCUUCUCAACUUUGCUGUGGUCACACCGUUUCCACAGCAUUUU -(((.((......))..)))...............((((((((..((...))..)))))))).... ( -14.90, z-score = -1.91, R) >droEre2.scaffold_4820 8150862 59 + 10470090 -------CAAAGUGUGUGGUAUUUCUUCUCUACUUUGCUGAGGUCACACAGUUUCCACAGCAUUUU -------.(((((((((((.................((((.(....).))))..))))).)))))) ( -11.41, z-score = -0.61, R) >consensus _GAGUGGCAACGUGUGGGGUAUUUCUGCUCUACUUUGCUGUGGUCACACUGUUUCCACAGCAUUUU .............((((((((....))))))))..((((((((..((...))..)))))))).... (-14.36 = -15.40 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:49 2011