| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,667,732 – 25,667,833 |
| Length | 101 |
| Max. P | 0.953856 |
| Location | 25,667,732 – 25,667,833 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.60 |
| Shannon entropy | 0.55099 |
| G+C content | 0.41859 |
| Mean single sequence MFE | -15.88 |
| Consensus MFE | -8.59 |
| Energy contribution | -8.98 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.953856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25667732 101 + 27905053 ---AGGCAAACAAAGCCUUC-AC----------GCCAUCAUUAAAUCUAAAAA----UCAUACCUUUGUACACACCACUUUAA-CCCCCGAGAGCAAGACUUUCUCUUGCCAAUUUUUCA ---.(((((((((((.....-..----------....................----......))))))..............-.....(((((.....)))))..)))))......... ( -12.41, z-score = -1.90, R) >droSim1.chr3R 25341998 97 + 27517382 ---UGGCAAACAAAGCCUUC-AC----------GCCAUCAUUAAAUCUAAAA-----UCGUACCUUUGUACACC--AAUUUAA-CCCC-GAGAGCAAGACUUUCUCUUGCCAAUUUUUCA ---((((((..((((.(((.-..----------((..((.(((....)))..-----..((((....))))...--.......-....-))..))))).))))...))))))........ ( -14.30, z-score = -2.02, R) >droSec1.super_4 4518070 97 + 6179234 ---UGGCAAACAAAGCCUUC-AC----------GCCAUCGUUAAAUCUAAAA-----UCGUACCUUUGUACACA--AAUUUAA-UCCC-GAGAGCAAGACUUUCUCUUGCCAAUUUUUCA ---((((((..((((.(((.-..----------((..(((((((((......-----..((((....))))...--.))))))-...)-))..))))).))))...))))))........ ( -15.60, z-score = -1.97, R) >droYak2.chr3R 8032957 97 - 28832112 ---UGGCAAACAAAGCGCCC-AUCUGCGGGGCAACCAUCAUUAAAUCUGAAAA----UUGUACC----UACACA--ACUUUAA-CCCC-GAAAGCAAGACUUUCUCUUGCCAA------- ---((((((.....(((...-...)))((((......(((.......)))...----((((...----...)))--)......-))))-(((((.....)))))..)))))).------- ( -20.40, z-score = -1.65, R) >droEre2.scaffold_4820 8135344 97 - 10470090 ---UGGCUAACAAAGCCCCC-AUCUGCGAGGCAUCCAUCACUAGGCGUAAAAA----UUGUACC----UACACA--ACUUUAA-CCCC-GAAAGCCAGACUUUCUCUUGCCAA------- ---.((((.....))))...-........((((..........((.((.(((.----((((...----...)))--).))).)-).))-(((((.....)))))...))))..------- ( -19.60, z-score = -1.60, R) >droAna3.scaffold_13340 18771428 113 + 23697760 CCACCACGAACACCUCGACCGAUCUCCUGAACAUCCAAAGUUGAGAAAAAAAAAAAUCAGUGCCAAUGUAUAUGUACCUACAAAUCCCCGAAAGCAAGACUUUCUCUUGCCAA------- ......((.....((((((.(((.........)))....))))))..............((((..........))))...........))...((((((.....))))))...------- ( -13.00, z-score = -0.68, R) >consensus ___UGGCAAACAAAGCCUCC_AC__________GCCAUCAUUAAAUCUAAAAA____UCGUACCUUUGUACACA__ACUUUAA_CCCC_GAAAGCAAGACUUUCUCUUGCCAA_______ ....(((((..................................................((((....))))..................(((((.....)))))..)))))......... ( -8.59 = -8.98 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:45 2011