| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,666,488 – 25,666,578 |
| Length | 90 |
| Max. P | 0.797471 |
| Location | 25,666,488 – 25,666,578 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 66.54 |
| Shannon entropy | 0.62235 |
| G+C content | 0.42561 |
| Mean single sequence MFE | -19.06 |
| Consensus MFE | -11.19 |
| Energy contribution | -11.05 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25666488 90 - 27905053 UCGAAUACCA---CCAUU------------UCCAUUUCCAGCCGGAUGCUGCCAGAACAAUUGA---GCCAAUAUCGUUAUAUUGGCAUUGAAAGCUGCUCAGAUCGA ((((......---.....------------......(((....)))..(((.(((..((((...---((((((((....))))))))))))....)))..))).)))) ( -18.20, z-score = -0.41, R) >droAna3.scaffold_13340 18770240 85 - 23697760 CCGCACUCCA-------------UUCAAAUCCAAACAAUAUGCGAUUGUUUUCUUGGCUCUUGAUAUUAUAAUAUCAAUAUAUUGUCACUGACA-CAUC--------- .((((.....-------------.................))))..((((....((((..(((((((....)))))))......))))..))))-....--------- ( -9.55, z-score = -0.26, R) >droEre2.scaffold_4820 8133999 84 + 10470090 GCGAAUACCG---------------------CCAUUUGCAGCCGGAUGCUGCCGGAACAAUUGA---GCCAAUAUCGUUAUAUUGGCAUUGAGAAUGGCCAAGAAUGA .........(---------------------(((((..(((((((......)))).........---((((((((....)))))))).)))..))))))......... ( -26.30, z-score = -2.03, R) >droYak2.chr3R 8031563 105 + 28832112 GUGAAUACCAAACCAAACCAAACUAUCAUUUCCAUUUCCAGCCGGAUGCCGCCAGAACAAUUGA---GCCAAUAUUGUUAUAUUGGCAUUGAAAAUGGCUCGAAUCGA ...................................(((.((((((......))....((((...---((((((((....)))))))))))).....)))).))).... ( -20.00, z-score = -0.64, R) >droSec1.super_4 4516837 102 - 6179234 UCGAAUACCA---CCAUUUCCAUUUCCAUAUCCAUUUCCAGCCGGAUGCUGCCAGAACAAUUGA---GCCAAUAUCGUUAAAUUGGCAUUGAAAGCGGCUCAGAUCGA ((((......---................((((..........))))(((((.....((((...---((((((........))))))))))...))))).....)))) ( -19.20, z-score = -0.00, R) >droSim1.chr3R 25340420 102 - 27517382 UCGAAUACCA---CCAUUUCCAUUUCCAUAUCCAUUUCCAGCCGGAUGCUGCCAGAACAAUUGA---GCCAAUAUCGUUAUAUUGGCAUUGAAAGCGGCUCAGAUCGA ((((......---................((((..........))))(((((.....((((...---((((((((....))))))))))))...))))).....)))) ( -21.10, z-score = -0.61, R) >consensus UCGAAUACCA___CCAUU_____UUCCAU_UCCAUUUCCAGCCGGAUGCUGCCAGAACAAUUGA___GCCAAUAUCGUUAUAUUGGCAUUGAAAGCGGCUCAGAUCGA ........................................(((((......))..............((((((((....)))))))).........)))......... (-11.19 = -11.05 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:44 2011