| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,662,876 – 25,662,995 |
| Length | 119 |
| Max. P | 0.803405 |
| Location | 25,662,876 – 25,662,995 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.59 |
| Shannon entropy | 0.26397 |
| G+C content | 0.55880 |
| Mean single sequence MFE | -44.18 |
| Consensus MFE | -27.84 |
| Energy contribution | -29.68 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25662876 119 + 27905053 CCAAAGGAAGAAUACUGAGUUGCGCACCAUCGAUCUGCUGAAGACGGCAACUAGAUUGUGGUGCCGGUUGCCCGAAAGGCAUCGCCAUGCGUUUGAGAGGCCACUUUGGUAAGCUUCCC- .....(((((..(((..(((.((((((((.((((((((((....))))....)))))))))))).((((((.(....))))..))).............)).)).)..)))..))))).- ( -43.70, z-score = -2.46, R) >droYak2.chr3R 8027879 120 - 28832112 UCAGAGGAAGAAUCCCGAGUUGGCGACCACCGAACUGCUGAAAACUGCCACUCGCUUGUGGUGUCGACUGGAUGAAAGUCAGCGGCAUGCAUUUGAGAGGCCACUUUGGUAAGCUACUUU ...(.(((....))))((((.(((....((((((.((.........(((.((((..((((.(((((.(((.((....))))))))))))))..)))).))))).))))))..))))))). ( -34.30, z-score = 0.12, R) >droSec1.super_4 4513188 119 + 6179234 CCAAAGGAAGCAUACCGAGAUGGCCACCACCGAUCUGCUGAAGACGGCGACUCGAUUGUGGUGCCGGCUGCCCGAAAGCCAUCGCCAUGCGUUUGAGAGGCCACUUUGGUGAGCUCCCC- .....((.(((.(((((((.(((((..(.(((.(((.....)))))).).(((((.(((((((..((((.......))))..)))))))...))))).))))).))))))).))).)).- ( -49.90, z-score = -3.69, R) >droEre2.scaffold_4820 8129446 119 - 10470090 UCAGCGGAAGAAUCCCGAGUUGGCGACCACCGAUCUGCUGAAAACGGCGACUCGAUUGUGGUGUCGCCUGGAUGAGAGUCAGCGGCAUGCAUUUGAGAGUCCACUUUGGUAAGCUACUU- ...(.(((....))))((((.(((....(((((...((((....))))(((((....((((((((((...(((....))).))))))).)))....)))))....)))))..)))))))- ( -38.70, z-score = -0.50, R) >droSim1.chr3R 25336347 119 + 27517382 CCAAAGGAAGCAUACCGAGAUGGCCACCACCGAUCUGCUGAAGACGGCGACUCGAUUGUGGUGCCGGCUGCCCGAAAGCCAUCGCCAUGCGUUUGAGAGGCCACUUUGGUGAGCUUCCC- .....((((((.(((((((.(((((..(.(((.(((.....)))))).).(((((.(((((((..((((.......))))..)))))))...))))).))))).))))))).)))))).- ( -54.30, z-score = -4.97, R) >consensus CCAAAGGAAGAAUACCGAGUUGGCCACCACCGAUCUGCUGAAGACGGCGACUCGAUUGUGGUGCCGGCUGCCCGAAAGCCAUCGCCAUGCGUUUGAGAGGCCACUUUGGUAAGCUACCC_ .....((.((..(((((((.(((((...........((((....))))..(((((.(((((((..((((.......))))..)))))))...))))).))))).)))))))..)).)).. (-27.84 = -29.68 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:44 2011