| Sequence ID | dm3.chr2L |
|---|---|
| Location | 819,689 – 819,753 |
| Length | 64 |
| Max. P | 0.940717 |
| Location | 819,689 – 819,753 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 69.27 |
| Shannon entropy | 0.60571 |
| G+C content | 0.37118 |
| Mean single sequence MFE | -15.12 |
| Consensus MFE | -7.75 |
| Energy contribution | -8.37 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 819689 64 - 23011544 ACAUUUUAGCUAUUUAGCUACAAAAGUAAGUUGAUAUUGGUCAGCACUGUUGGCGACUAAAGUA ..((((((((...((((((((....)).)))))).....((((((...))))))).))))))). ( -12.80, z-score = -0.49, R) >droAna3.scaffold_12916 2710071 60 - 16180835 ----GUAUGCAGCCGGCUUAUUUUAAUCGAUAAGUAUUCGAUAAGUUUGUUGCAGUUUCUAGCC ----...((((((..(((((......((((.......)))))))))..)))))).......... ( -14.80, z-score = -2.34, R) >droEre2.scaffold_4929 875829 64 - 26641161 AGAAAUAAGAUAUUUAGCUAUUUAAGUCAUUUCAUAUUGGCCAGCACUGUUGGCGGCUAAAGCA ........(...(((((((........((........))((((((...))))))))))))).). ( -14.20, z-score = -0.93, R) >droYak2.chr2L 803204 64 - 22324452 CUACUUAAAUUAUUUAGCUAUUUAAGUCAGUUUCUAUUGGUCAGCACUGUUGGCGGCUAAAACA ............(((((((........((((....))))((((((...)))))))))))))... ( -13.10, z-score = -1.59, R) >droSec1.super_14 790074 64 - 2068291 AUAUUUUAGCUAUUUAGCUACAAAAGUCAGUUGGUACUGGUCAGCACUGUUGGCGGCUAAAGCA ........(((..((((((........((((....))))((((((...))))))))))))))). ( -17.50, z-score = -1.32, R) >droSim1.chr2L 821789 64 - 22036055 AUAUUUUAGCUAUUUAGCUACAAAAGUCAGUUGAUACUGGUCAGCACUGUUGGCGGCUAAAGCA ........(((..((((((.(((.(((..((((((....))))))))).)))..))))))))). ( -18.30, z-score = -1.93, R) >consensus AUAUUUAAGCUAUUUAGCUACAAAAGUCAGUUGAUAUUGGUCAGCACUGUUGGCGGCUAAAGCA ............(((((((........((((....))))((((((...)))))))))))))... ( -7.75 = -8.37 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:04 2011