| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,655,456 – 25,655,568 |
| Length | 112 |
| Max. P | 0.592905 |
| Location | 25,655,456 – 25,655,568 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 72.30 |
| Shannon entropy | 0.54500 |
| G+C content | 0.40494 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.02 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.592905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25655456 112 - 27905053 AUUUA---UGCUGCUGUUGCAUUAGACUACGGCCAUAAGUCAUGCAUUGGAAAUGUUUUGCUAAUUUAUGGCUUGGAAAAGAGGACAUUUCCACCUUUGCCACCACGCAAGCAUU (((((---(((((..(((......)))..))).))))))).((((..((((((((((((((((.....))))((....)).))))))))))))...((((......)))))))). ( -29.50, z-score = -1.06, R) >droAna3.scaffold_13340 18759284 97 - 23697760 -AUUGCAUCCUUUUAAGUGCAUUUUUGCAUGAUUAUU--UUAUUUCUUCAACCCCACUU--UAAAGUGUCACCUGGCAGAAA------UGUUGCCUUU-UCACCACGCA------ -..(((........(((.((((((((((.((((.(((--(((.................--))))))))))....)))))))------)))...))).-.......)))------ ( -16.72, z-score = -1.51, R) >droEre2.scaffold_4820 8121892 94 + 10470090 --------------------AUCA-ACCACGGCAAUAAGUCAUCUAUUAGAAAUGUUUUGCUAAUUUAUGGCUUGGAAAAGAGGACAUUUCCACCUUUGCCACCACGCUAGCAUU --------------------....-.....(((((.(((((((..(((((.((....)).)))))..)))))))(((((........)))))....))))).............. ( -21.00, z-score = -1.61, R) >droYak2.chr3R 8019583 112 + 28832112 AUUUA---UGCGGCUGUUGCAUUAGACUACGGCCAUAAGUCAUCCAUUAGAAAUGUUUUGCUAAUUUAUGGCUUGGAAAAGAGGACAUUUCCACCUUUGCCACCACGCAAGCAUA ...((---(((((((((..(....)...))))))..(((((((..(((((.((....)).)))))..)))))))((.((((.(((....)))..)))).)).........))))) ( -28.30, z-score = -1.26, R) >droSec1.super_4 4505840 115 - 6179234 AUUUAUGCUGCUGCUGUUGCAUUAGACUACGGCCAUAAGUCAUGCAUUGGAAAUGUUUUGCUAGUUUAUGGCUUGGAAAAGAGGACAUUUCCACCUUUGCCACCACGCAAGCAUU (((((((..((((..(((......)))..))))))))))).((((..((((((((((((((((.....))))((....)).))))))))))))...((((......)))))))). ( -31.30, z-score = -0.78, R) >droSim1.chr3R 25328110 115 - 27517382 AUUUAUGCUGCUGCUGUUGCAUUAGACUACGGCCAUAAGUCAUGCAUUGGAAAUGUUUUGCUAAUUUAUGGCUUGGAAAAGAGGACAUUUCCACCUUUGCCACCACGCAAGCAUU (((((((..((((..(((......)))..))))))))))).((((..((((((((((((((((.....))))((....)).))))))))))))...((((......)))))))). ( -30.50, z-score = -0.88, R) >consensus AUUUA___UGCUGCUGUUGCAUUAGACUACGGCCAUAAGUCAUGCAUUGGAAAUGUUUUGCUAAUUUAUGGCUUGGAAAAGAGGACAUUUCCACCUUUGCCACCACGCAAGCAUU ..............................(((...(((((((..(((((..........)))))..)))))))(((((........)))))......))).............. (-12.93 = -13.02 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:43 2011