| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,654,901 – 25,654,996 |
| Length | 95 |
| Max. P | 0.942343 |
| Location | 25,654,901 – 25,654,996 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.43 |
| Shannon entropy | 0.40158 |
| G+C content | 0.35547 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.62 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25654901 95 - 27905053 CUUUUACUUAGCAAUUAGUAAAAGACUUUUAUUAUUUAUUUAAUAGUUUAAGCGGCUGCCUUCAAAUGCCCUUCAAAGGGCUCGGCAGCCAUUUG--------- ((((((((........)))))))).(((..((((((.....))))))..))).(((((((.......(((((....)))))..))))))).....--------- ( -32.20, z-score = -5.00, R) >droEre2.scaffold_4820 8121358 89 + 10470090 CUUUUAUUUUGCAAUUAGU-----ACUUUUAUUAUUUGUUUAAUAGUUUCAGUGGUUGCCCUUAAAUG-ACUGCAAAGAUCUGCGCAGCUAUUGU--------- ...(((((..((((.((((-----(....))))).))))..)))))...((((((((((.(......)-...(((......))))))))))))).--------- ( -19.90, z-score = -1.94, R) >droYak2.chr3R 8019061 103 + 28832112 CUUUUACCUGGCAAUUAGUUUAAGACUUUUAUUAUUUAUUUAAUAGAUUUAGCGGGAGCUCUUAAAUA-CCCUCACAGAUCUCUGCCAUUGCAAUUGCCAUUGC ........((((((((.((((((((..(((((((......)))))))....((....)))))))))).-......(((....))).......)))))))).... ( -22.80, z-score = -2.20, R) >droSec1.super_4 4505299 94 - 6179234 CUUUUACCAAGCAAUUAGUAAAAGACUUUUAUUAUUUAUUUAAUAGGUUUAGCGGCUGCCUUCAAAUG-UCUUCAAAGGGCUCGGCAGCCAUUGG--------- (((((((.((....)).)))))))...(((((((......)))))))......(((((((.......(-(((.....))))..))))))).....--------- ( -24.40, z-score = -2.31, R) >droSim1.chr3R 25327569 94 - 27517382 CUUUUACCAAGCAAUUAGUAAAAGACUUUUAUUAUUUAUUUAAUAGUUUUAGCGGCUGCCUUCAAAUG-CCUUCCAAGGGCUCGGCAGCCAUUGG--------- (((((((.((....)).))))))).((...((((((.....))))))...)).(((((((.......(-(((.....))))..))))))).....--------- ( -26.90, z-score = -2.90, R) >consensus CUUUUACCUAGCAAUUAGUAAAAGACUUUUAUUAUUUAUUUAAUAGUUUUAGCGGCUGCCUUCAAAUG_CCUUCAAAGGGCUCGGCAGCCAUUGG_________ ..........((....(((.....))).((((((......)))))).....))(((((((.......................))))))).............. (-10.50 = -10.62 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:42 2011