| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,632,872 – 25,632,971 |
| Length | 99 |
| Max. P | 0.650907 |
| Location | 25,632,872 – 25,632,971 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.82 |
| Shannon entropy | 0.49549 |
| G+C content | 0.50644 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -19.17 |
| Energy contribution | -19.73 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25632872 99 + 27905053 ---------AAGCUGUGGAAAUUGCGUUCCA-GUUGGAAAGCAGUUGCGUGAUCGGGUCGUUGCCAGACCGGCCGCAGGUCUCACGCGACCAUCUCUAGUU-UGUUUUCA---------- ---------((((((.(((...(((.((((.-...)))).)))(((((((((...((((.......))))((((...)))))))))))))..))).)))))-).......---------- ( -36.80, z-score = -2.11, R) >droEre2.scaffold_4820 8099548 99 - 10470090 ---------AAGCUGUGGAAACUGCGUUCCA-AUUGGAAAGUCGGUGCGUGAUUGGGGCGUUGCCAGACCGCUCGCUUGUCUCACGCGGCCGUCACUAGUU-UGUUUUCA---------- ---------......(((((((.((.((((.-...)))).(.((((((((((...(((((..((......)).)))))...)))))).)))).)....)).-.)))))))---------- ( -33.30, z-score = -0.43, R) >droYak2.chr3R 7996432 99 - 28832112 ---------AAGCUGUGGAAACUGCGUUCCA-AUUGGAAAGUCGUUGCGUGAUCGGGGCGUUGCCAGACCGGCCGCAGGUCUCACGCGGCCAUCUCUAGUU-UGUUUUCA---------- ---------((((((.(((....((.((((.-...)))).)).(((((((((....(((...))).((((.......)))))))))))))..))).)))))-).......---------- ( -32.00, z-score = 0.04, R) >droSec1.super_4 4483409 99 + 6179234 ---------AAGCUGUGGAAAUUGCGUUCCA-GUUGGAAAGUCGUUGCGUGAUCGGGUCGUUGCCAGACCGGCCUCAGGUCUCACGCGACCAUCUCUAGUU-UGUUUUCG---------- ---------((((((.(((....((.((((.-...)))).)).(((((((((...((((.......))))((((...)))))))))))))..))).)))))-).......---------- ( -33.20, z-score = -1.53, R) >droSim1.chr3R 25305469 99 + 27517382 ---------AAGCUGUGGAAAUUGCGUUCCA-GUUGGAAAGUCGUUGCGUGAUCGGGUCGUUGCCAGACCGGCCUCAGGUCUCACGCGACCAUCUCUAGUU-UGUUUUCA---------- ---------((((((.(((....((.((((.-...)))).)).(((((((((...((((.......))))((((...)))))))))))))..))).)))))-).......---------- ( -33.20, z-score = -1.55, R) >droVir3.scaffold_13047 8798559 120 + 19223366 GAUAUGUCAAAAUUGUUAAGUUUAUAUUUGAUGGUAUAAUGUACUAAUUUGGAUGCGUUCCCUGCAAACAGCCUAUCGUAUACUGCCGAUAGUUUUUAGAUGCGAUACCAAAUGUUUGCU (((..(((.((((((.((...(((((((....)))))))..)).)))))).)))..)))....(((((((...((((((((.(((...........))))))))))).....))))))). ( -24.30, z-score = -0.71, R) >consensus _________AAGCUGUGGAAAUUGCGUUCCA_GUUGGAAAGUCGUUGCGUGAUCGGGUCGUUGCCAGACCGGCCGCAGGUCUCACGCGACCAUCUCUAGUU_UGUUUUCA__________ ..........(((((..((....((.((((.....)))).)).(((((((((..((.......)).((((.......)))))))))))))..))..)))))................... (-19.17 = -19.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:39 2011