| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,632,733 – 25,632,835 |
| Length | 102 |
| Max. P | 0.571104 |
| Location | 25,632,733 – 25,632,835 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 73.64 |
| Shannon entropy | 0.49304 |
| G+C content | 0.53642 |
| Mean single sequence MFE | -36.42 |
| Consensus MFE | -24.68 |
| Energy contribution | -23.75 |
| Covariance contribution | -0.93 |
| Combinations/Pair | 1.59 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25632733 102 + 27905053 ---GUGCGCAGCACUAGU-GUCGUUGCCGGACGGUUGCGGCAAUCCGGGGCGAACUUCUUGAAAGCGUUUUGCUUUCUUUUUGCGAGCUUGUGC--GGUGUGAAGGAA ---..((((.((((.(((-(((((.(((....))).)))))........(((((......((((((.....))))))..)))))..))).))))--.))))....... ( -34.20, z-score = 0.37, R) >droEre2.scaffold_4820 8099410 101 - 10470090 ---GUGCGCAGCACGAGU-AGCGUUGCCGGACGGUUGCGGCAAUCCGGGGCGAACUUCUU-AAGGCGGUUUGCUUUGUUUUCGCGAGCUUGUGC--GGUGCAGAGGGA ---.(((((.((((((((-.(((((((((........))))))..(((((((((((.(..-...).)))))))))))....)))..))))))))--.)))))...... ( -44.60, z-score = -1.90, R) >droYak2.chr3R 7996294 101 - 28832112 ---GUGCGCAGCACAAGU-GGCGUUGCCGGACGGUUGCGACAAUCCGGGGAGAACUUCUU-AAAGCGGUUUGCUUUCUUUUCGUGAGCUUGUGC--GGUGCGGAGGGU ---.(((((.((((((((-..(((.(((....))).)))....((((..(((((......-..(((.....))))))))..)).))))))))))--.)))))...... ( -37.10, z-score = -0.55, R) >droSec1.super_4 4483270 102 + 6179234 ---GUGCGCAGCACGAGU-GGCGUUGCCGGACGGUUGCGGCAAUCCGGGGCGAACUUCUUGAAAGCGUUUUGCUUUCUUUUUGCGAGCUUGUGC--GGUGCGGAGGAA ---.(((((.((((((((-((.(((((((........)))))))))...(((((......((((((.....))))))..)))))..))))))))--.)))))...... ( -41.30, z-score = -0.81, R) >droSim1.chr3R 25305330 102 + 27517382 ---GUGCGCAGCACGAGU-GGCGUUGCCGGACGGUUGCGGCAAUCCGGGGCGAACUUCUUGAAAGCGUUUUGCUUUCUUUUUGCGAGCUUGUGC--GGUGCGGAGGAA ---.(((((.((((((((-((.(((((((........)))))))))...(((((......((((((.....))))))..)))))..))))))))--.)))))...... ( -41.30, z-score = -0.81, R) >droVir3.scaffold_13047 8798425 108 + 19223366 AGGCCGAAAGUCAAAAGUCGGUUAUGACAAAUCGAUACCUUUGUUAAUUUUGAAAUUAUGUCUAGUAUGAUAUUGACUUUUUGUUAUACCACACAUGUUUCUGAACAA .((((((..........)))))).(((((((........))))))).(((.(((((.((((...((((((((.........))))))))...))))))))).)))... ( -20.00, z-score = -0.58, R) >consensus ___GUGCGCAGCACGAGU_GGCGUUGCCGGACGGUUGCGGCAAUCCGGGGCGAACUUCUUGAAAGCGUUUUGCUUUCUUUUUGCGAGCUUGUGC__GGUGCGGAGGAA .....((((.((((((((........(((((..((....))..))))).(((((.......(((((.....)))))...)))))..))))))))...))))....... (-24.68 = -23.75 + -0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:38 2011