| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,624,903 – 25,625,023 |
| Length | 120 |
| Max. P | 0.938877 |
| Location | 25,624,903 – 25,625,023 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 68.29 |
| Shannon entropy | 0.68205 |
| G+C content | 0.39589 |
| Mean single sequence MFE | -28.23 |
| Consensus MFE | -11.81 |
| Energy contribution | -11.34 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25624903 120 - 27905053 UUCAAUUUGUUUAAAAAUUAAGAAAAUUACCAAUGUUCUGGACACCAGAGCAAGUGGAGAGCAUGCUGGAAGUGCUAAAGACCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUGGUGA ((((((((......)))))..........((..((((((((...)))))))).(((((((((((.......)))))......))))))))...)))(((.((((....)))).))).... ( -30.70, z-score = -1.64, R) >droSim1.chr3R 25296929 120 - 27517382 UUCAAUUUGUUUAAAAAUUAAGAAAAUUACCAAUGUUCUGGACACCAGAGCAAGUGGAGAGCAUGCUGGAAGUGCUAAAGACCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUAGUGA .(((((((......)))))..........((..((((((((...)))))))).(((((((((((.......)))))......))))))))...))((((.((((....)))).)).)).. ( -27.40, z-score = -1.11, R) >droSec1.super_4 4475391 120 - 6179234 UUCAAUUUGUUUAAAAAUUAAGAAAAUUACCAAUGUUCUGGACACCAGAGCAAGUGGAGAGCAUGCUGGAAGUGCUAAAGACCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUGGUGA ((((((((......)))))..........((..((((((((...)))))))).(((((((((((.......)))))......))))))))...)))(((.((((....)))).))).... ( -30.70, z-score = -1.64, R) >droYak2.chr3R 7988474 120 + 28832112 UUCAUUUUGUAUAAAAAUUAAGAAAAUUGCCAAUGUUCUGGACACCAGAGCAAGUGGAGAGCAUGCUGGAAGUGCUAAAGACCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUCGUGA .....((((((..................((..((((((((...)))))))).(((((((((((.......)))))......))))))))...((....))...)))))).......... ( -27.50, z-score = -0.61, R) >droEre2.scaffold_4820 8091626 120 + 10470090 UUCAUUUUGUUUAAAAAUUAAGAAAAUUGCCAAUGUUCUGGACACCAGAGCAAGUGGAGAGCAUGCUGGAAGUGCUGAACUCCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUCGUGA .((((............................((((((((...))))))))....(((.((((..((.((((((((...(((.....))).....))).))))).)).))))))))))) ( -28.40, z-score = -0.37, R) >droAna3.scaffold_12911 5328071 120 - 5364042 UUCGAAAAGUAUAAAAAUUGUAAAUAAAAAUAAUGUUUUGGUCAACGGAACAGGUCGAGGGCAUGCUCAACGUGCUCAAGACCUCCACUGACCGUACGGUAAUCUACAAAUGUUUGGUAA .(((((..((((....(((((........))))).....(((((..(((...((((..(((((((.....)))))))..)))))))..))))))))).(((...))).....)))))... ( -29.30, z-score = -1.89, R) >dp4.chr2 24067019 113 + 30794189 -------UUCAAGCAAAAUAAAUAUCAAUUCAAUGUUUUGGUCAUUAGAGCAGGUUGAGGGCAUGCUAAAUGUCCUCAAAACCUCGACAGAUCGAACUGUUGUGUACAAAUGCCUGGUUA -------......(((((((.............))))))).......((.((((((((((((((.....)))))))))..((..((((((......)))))).))......))))).)). ( -29.92, z-score = -2.21, R) >droPer1.super_0 11259419 113 + 11822988 -------UUCAAGCAAAAUAAAUAUCAAUUCAAUGUUUUGGUCAUUAGAGCAGGUUGAGGGCAUGCUAAAUGUCCUCAAAACCUCGACAGAUCGAACUGUUGUGUACAAAUGCCUGGUUA -------......(((((((.............))))))).......((.((((((((((((((.....)))))))))..((..((((((......)))))).))......))))).)). ( -29.92, z-score = -2.21, R) >droWil1.scaffold_181089 5919049 107 - 12369635 -------------AACGAUUAAUAAAAAACAAAUGGUUUGGUCCUCCGAACAAGUUGAGGACAUUUUAAAUGUCCUCAAGACGGCGACGGACAAGACCGUAAUAUACAAAUGUCUAGUUA -------------...................(((((((.((((..((......((((((((((.....)))))))))).....))..)))).))))))).................... ( -29.40, z-score = -3.15, R) >droVir3.scaffold_12855 1205200 105 - 10161210 ------------UUUGUUUAGUUUUUAA---AAUGUUAUGGUCCUUGGAACAGGUGGAGGGCAUGUUGGGUGUCCUCAAAACCUCAACGGACAAAACUGUUAUAUACAAAUGCCUAGUAA ------------........((...(((---...(((...(((((((....((((.((((((((.....))))))))...))))))).))))..)))..)))...))............. ( -25.80, z-score = -0.71, R) >droMoj3.scaffold_6540 26951451 99 - 34148556 ------------------GAAUUUUAAA---UAUGUUAUGGUCUCUGGAACAGGUUGAGGGCAUGCUAAGUGUCCUCAAAACCUCGACGGACAAAACUGUUGUUUAUAAAUGCCUCGUAA ------------------..........---((((....(((.....(((((((((((((((((.....)))))))))..)))).(((((......)))))))))......))).)))). ( -26.20, z-score = -2.23, R) >droGri2.scaffold_14624 3790983 93 - 4233967 ------------------------UUCA---AAUGCUUUGGUCCUUAGAGCAGGUUGAGGGCAUGCUGGGUGUCCUCAAAACCUCCACGGACAAAAAUGUUAUAUAUAAAUGCCUCGUCA ------------------------....---(((..(((.((((...(((....((((((((((.....))))))))))...)))...)))).)))..)))................... ( -23.50, z-score = -0.63, R) >consensus _______UGU_UAAAAAUUAAGAAAAAAACCAAUGUUCUGGUCACCAGAGCAAGUGGAGGGCAUGCUGGAUGUCCUCAAGACCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUGGUGA .................................((((((((...)))))))).((((((.......................))))))................................ (-11.81 = -11.34 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:37 2011