| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,615,378 – 25,615,486 |
| Length | 108 |
| Max. P | 0.910442 |
| Location | 25,615,378 – 25,615,486 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 89.14 |
| Shannon entropy | 0.14455 |
| G+C content | 0.42790 |
| Mean single sequence MFE | -20.30 |
| Consensus MFE | -18.59 |
| Energy contribution | -18.37 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25615378 108 + 27905053 AUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUUUCUUUAUUAGGAAAGAGCCAACGCAGAAAGCAAACGAAAUACACAAUACACACAAAA .(((((....(((((((.....)).........................((((((....)))))))))))...))))).............................. ( -20.30, z-score = -2.03, R) >droSec1.super_4 4465973 97 + 6179234 AUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUCUUUU----AGGAAAGAGCCAACGCAGAAAGCAAACGAAAUACACACAAAA------- .(((((....(((((....((((.((((((.....((....))....))))))))----))....)))))...))))).......................------- ( -20.30, z-score = -1.81, R) >droSim1.chr3R 25287127 97 + 27517382 AUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUCUUUU----AGGAAAGAGCCAACGCAGAAGGCAAACGAAAUACACACAAAA------- .(((((....(((((....((((.((((((.....((....))....))))))))----))....)))))...))))).......................------- ( -20.30, z-score = -1.44, R) >consensus AUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUCUUUU____AGGAAAGAGCCAACGCAGAAAGCAAACGAAAUACACACAAAA_______ .(((((....(((((((.....)).......................(((((........))))))))))...))))).............................. (-18.59 = -18.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:36 2011