| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,604,186 – 25,604,282 |
| Length | 96 |
| Max. P | 0.573135 |
| Location | 25,604,186 – 25,604,282 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 62.76 |
| Shannon entropy | 0.73204 |
| G+C content | 0.44508 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -9.78 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25604186 96 + 27905053 AAAUUUCCUAUCCGCGUUUUCCGAGGUAUCUCCUCGUCGA---------CCUCCUUGUUUCUUAUCGAAUCCCUUAUGUUCGGGGGGAAUUUCGCAAUGCUGCAU .............(((((...((((((.((((((((..((---------(........(((.....)))........))))))))))))))))).)))))..... ( -21.19, z-score = -0.31, R) >droWil1.scaffold_181089 5894473 89 + 12369635 AUAGUUUCCUUUUACAUUCUGUGGGGGAUUUGUUUAUCAG--------------AAAAUUUUCUUGUAUGCUUUCAG--UAAGUGUGAAUUUCGCCAUGUUGUAU ............((((...((((((..(((..(.(((.((--------------((....)))).))).((((....--.)))))..)))..).))))).)))). ( -14.20, z-score = -0.05, R) >droSim1.chr3R 25276163 80 + 27517382 ----------------UUUUCAGAGGUAUCUCCCCGUCGA---------CCUCCUUGUUUCUCAUCGAAUCCCUUAUGCUCGGGGGGAAUUUCGCAAUGCUGCAU ----------------......(((((.((((((((....---------.........(((.....)))...........)))))))))))))(((....))).. ( -19.95, z-score = -0.33, R) >droAna3.scaffold_12911 5306269 104 + 5364042 AUAUAACCU-UUUAAGUUUUAAAGAGUAUUCCCCUAUCGGCAUACACAUCCUUCCCGUUUUUAUCGAAGACUUUUAUGCUUUGGGGGAAUUUCGCAAUGCUGCAU .........-.............(((.(((((((((..((((((......((((...........)))).....)))))).))))))))))))(((....))).. ( -24.90, z-score = -2.29, R) >droEre2.scaffold_4820 8071070 103 - 10470090 AUAUGACCUGCUCAAGCUCACCGAAGUAUCUCCUCGUCGAGCUGUA--UCUUCCGUGUCUUUUAUCGAAACCCUUAUGCUCGUGGGGAAUUUCGCAAUGCUGCAU ........(((...(((....((((((...((((((.(((((....--..(((.(((.....))).)))........)))))))))))))))))....)))))). ( -25.34, z-score = -1.43, R) >droYak2.chr3R 7966114 103 - 28832112 AUAUUUCGCGCUCAACUUCGCCGAGGUAUUCCCUAGUCGAGUUGGA--UCCUCCUUGUCUUUUAUCGAAACUCUUAUGCUCGGGGGGAAUUUCGCAAUGCUGCAU .(((((((.((........)))))))))((((((..((((((.(((--...((..((.....))..))...)))...))))))))))))....(((....))).. ( -25.80, z-score = -0.22, R) >droSec1.super_4 4455111 91 + 6179234 -----UCCUAUCCGACUUUUCCGAGGUAAUUCCCCGUCGA---------CCUCCUUGUUUCUUAUGGAAUCCCUUAUGCUCGGGGGGAAUUUCGCAAUGCUGCAU -----...((((((.......)).))))(((((((.((((---------.(.....(((((....))))).......).)))))))))))...(((....))).. ( -20.00, z-score = 0.72, R) >consensus AUAUUUCCU_UUCAAGUUUUCCGAGGUAUUUCCUCGUCGA_________CCUCCUUGUUUUUUAUCGAAACCCUUAUGCUCGGGGGGAAUUUCGCAAUGCUGCAU ......................(((((.((((((((............................................)))))))))))))(((....))).. ( -9.78 = -9.87 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:33 2011