| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,603,445 – 25,603,552 |
| Length | 107 |
| Max. P | 0.521480 |
| Location | 25,603,445 – 25,603,552 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.12 |
| Shannon entropy | 0.49125 |
| G+C content | 0.53478 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -13.03 |
| Energy contribution | -14.02 |
| Covariance contribution | 0.99 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25603445 107 - 27905053 GGGCAAUCCGGCCAA------UUCCAAUUCCGAAUCCACACCCAUUUCCCAAUCCCAUUUGGCGGCAUGUGCCAUUUCCGCCGGCAU---UUCGCC-UGGAAUUAGUUGUUUUGCCG .(((((..((((.((------(((((......................((((......)))).(((..(((((.........)))))---...)))-))))))).))))..))))). ( -35.30, z-score = -2.70, R) >droSim1.chr3R 25275523 113 - 27517382 GGGCAAUCCGGCCAAUUCCAAUUCCAAUUCCUUUUCCACACCCAUUUCCCAAUCCCAUUUGGCGGCAUGCGCCAUUUCCGCCGGCUU---UUCGCC-UGGAAUUAGUCGUAUUGCGG ..(((((.((((.(((((((........................................(((((.(((...)))..)))))(((..---...)))-))))))).)))).))))).. ( -32.50, z-score = -1.80, R) >droSec1.super_4 4454491 90 - 6179234 GGGCAAUCCGGCCAA------UUCCAAUUCCUUUUCCACACCCAUUUCCCAAUCCCA-----------------UUUCCGCCGGCUU---UUCGCC-UGGAAUUAGUUGUACUGUCG .((((...((((.((------(((((.............................(.-----------------.....)..(((..---...)))-))))))).))))...)))). ( -15.70, z-score = -0.35, R) >droYak2.chr3R 7965380 95 + 28832112 GGGCAAUCCGGCCAA------------------UUCCACACCCAUUUCCCAAUCCCAUUCGGCGGCAUGUGCCAUUUCCGCCGGCUU---UUCGCC-UGGAAUUAGUUGUUUCGCCG .(((.(..((((.((------------------(((((......................(((((.(((...)))..)))))(((..---...)))-))))))).))))..).))). ( -29.90, z-score = -1.75, R) >droEre2.scaffold_4820 8070314 99 + 10470090 GGGCAAUCUGGCCAA------------------UUCCACACCCAUUUCCCUAUCCCAUCUGGCGGCAUGUGCCAUUUCCGCCGCCUUGAAUUAGUUGUGGAAUUAGUUGUAUUGUCG .((((((..(((.((------------------(((((((.........(((...((...((((((.............)))))).))...))).))))))))).)))..)))))). ( -30.62, z-score = -2.30, R) >droAna3.scaffold_12911 5305600 91 - 5364042 -----GCCCCACCAG-----------------AGGCCUAGCCCGUUUCCCAAUCCCAUUUGCUGGCAUGUGCCAUUUCCGACGGCCU---CCUGCC-UGAAAUUAGUUGUAUUGUCG -----..........-----------------((((..((.(((((...(((......))).((((....)))).....))))).))---...)))-)................... ( -17.20, z-score = 0.39, R) >consensus GGGCAAUCCGGCCAA__________________UUCCACACCCAUUUCCCAAUCCCAUUUGGCGGCAUGUGCCAUUUCCGCCGGCUU___UUCGCC_UGGAAUUAGUUGUAUUGCCG .(((((..((((...................................................(((....)))..((((...(((........)))..))))...))))..))))). (-13.03 = -14.02 + 0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:32 2011