| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,596,689 – 25,596,786 |
| Length | 97 |
| Max. P | 0.968802 |
| Location | 25,596,689 – 25,596,786 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 85.47 |
| Shannon entropy | 0.25739 |
| G+C content | 0.51528 |
| Mean single sequence MFE | -34.26 |
| Consensus MFE | -27.34 |
| Energy contribution | -28.18 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25596689 97 - 27905053 GGCGACGCCCUAGCACUUCCCAAUCCAGAAUUCCCGAUUCUGGCCUCCAAACGAGGUAUA--------CAUAUACUCGUAUCAAGGCUGGGGGUUGAAUGCCUUU ((((((.(((((((.(((......((((((((...)))))))).......(((((.....--------......)))))...)))))))))))))....)))... ( -32.70, z-score = -2.44, R) >droEre2.scaffold_4820 8063236 98 + 10470090 GGCGACGCCCUAGCACUUCCCAAUCCGGA-------AUUCUGGACUCCAAACGAGGGAUAUAUGUAUAUACAUGUACGUAUCAAGGCUGGGGGUUGAAUGCCUCU ((((((.(((((((...((((..(((((.-------...))))).((.....)))))).(((((((((....)))))))))....))))))))))....)))... ( -35.40, z-score = -2.65, R) >droYak2.chr3R 7958232 105 + 28832112 GGCGACGCCCUAGCACUUCCCAAUCCACAAUUCCCGAUUCUGGACUCCAAACGAGGGAUAUAUGUACACAUGUACGAGUAUCAAGGCUGGGGGUUGAAUGCCUUU ((((((.(((((((.(((.....((((.((((...)))).))))(((.....))).(((((.(((((....))))).))))))))))))))))))....)))... ( -34.00, z-score = -2.00, R) >droSec1.super_4 4447772 103 - 6179234 GGCGACGCCCUAGCACUUCCCAAUCCAGAAUUCCCGAUUCUGGCCUCC-AACGAGGGAUAUAC-UACUCGUAUACUCGUAUCAAGGCUGGGGGUUGAAUGCCUUU ((((((.(((((((.(((......((((((((...)))))))).....-.(((((...(((((-.....))))))))))...)))))))))))))....)))... ( -34.90, z-score = -2.21, R) >droSim1.chr3R 25268785 94 - 27517382 GGCGACGCCCUAGCACUUCCCAAUCCAGAAUUCCCGAUUCUGGCCUCC-AACGAGGGAUA----------UAUACUCGUAUCAAGGCUGGGGGUUGAAUGCCUUU ((((((.(((((((.(((......((((((((...))))))))((((.-...))))((((----------(......))))))))))))))))))....)))... ( -34.30, z-score = -2.30, R) >consensus GGCGACGCCCUAGCACUUCCCAAUCCAGAAUUCCCGAUUCUGGCCUCCAAACGAGGGAUAUA__UA__CAUAUACUCGUAUCAAGGCUGGGGGUUGAAUGCCUUU ((((((.(((((((.(((......(((((((.....)))))))((((.....))))..........................)))))))))))))....)))... (-27.34 = -28.18 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:29 2011