| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,595,831 – 25,595,886 |
| Length | 55 |
| Max. P | 0.924272 |
| Location | 25,595,831 – 25,595,886 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 87.82 |
| Shannon entropy | 0.21102 |
| G+C content | 0.43273 |
| Mean single sequence MFE | -15.74 |
| Consensus MFE | -13.38 |
| Energy contribution | -13.26 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25595831 55 + 27905053 CGAUUUUCAGCGCAAUUGUUUUGGGACUUGUUUUCCAAUCAAUGGCCGGGAAAGU ..((((((.(.((.((((..((((((......)))))).)))).)))..)))))) ( -13.50, z-score = -0.86, R) >droSim1.chr3R 25267975 55 + 27517382 CGAUUUCCAGCGCGAUUGUUUUGGGACUUGUUUUCCAAUCAAUGGCUGGGAAAGU ...((((((((.(.((((..((((((......)))))).)))))))))))))... ( -19.00, z-score = -2.73, R) >droSec1.super_4 4446993 55 + 6179234 CGAUUUCCAGCGCGAUUGUUUUGGGACUUGUUUUCCAAUCAAUGGCUGGGGAAGU ...(..(((((.(.((((..((((((......)))))).))))))))))..)... ( -18.80, z-score = -2.49, R) >droYak2.chr3R 7957255 55 - 28832112 GGAUUUGCAGCGCGAUUGUUUUGGGAUUUAUUUUUCUAUCGAUGGCUGGGAAAGU ...(((.((((.(.((((...(((((.......))))).))))))))).)))... ( -12.10, z-score = -1.11, R) >droEre2.scaffold_4820 8062465 55 - 10470090 GGAUUUUCAGCGCGAUUGUUUUGAAAUUUAUUUUUCUAUCGAUGGCGGGGAAAGU ..((((((..(((.((((....((((......))))...)))).)))..)))))) ( -15.30, z-score = -2.66, R) >consensus CGAUUUCCAGCGCGAUUGUUUUGGGACUUGUUUUCCAAUCAAUGGCUGGGAAAGU ...((((((((.(.((((..((((((......)))))).)))))))))))))... (-13.38 = -13.26 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:28 2011