| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,567,250 – 25,567,373 |
| Length | 123 |
| Max. P | 0.999049 |
| Location | 25,567,250 – 25,567,356 |
|---|---|
| Length | 106 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.14 |
| Shannon entropy | 0.51437 |
| G+C content | 0.55397 |
| Mean single sequence MFE | -45.55 |
| Consensus MFE | -19.84 |
| Energy contribution | -19.61 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.16 |
| Mean z-score | -3.54 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.62 |
| SVM RNA-class probability | 0.999049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25567250 106 + 27905053 --GCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUUUU-GGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-AC--GGACGUGCUUGUCCACCCA-CCCGCGAGGACAUA --.((((((.((((((..((.....))..)))))).))))-)).((.((((....)))).))((((((((((((-..--(((((....))))).....-.)))))))))))). ( -49.60, z-score = -3.51, R) >droSim1.chr3R 25239705 106 + 27517382 --GCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUUUU-GGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-AC--GGACGUGCUUGUCCACCCA-CCCGCGAGGACAUA --.((((((.((((((..((.....))..)))))).))))-)).((.((((....)))).))((((((((((((-..--(((((....))))).....-.)))))))))))). ( -49.60, z-score = -3.51, R) >droSec1.super_4 4420003 106 + 6179234 --GCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUUUU-GGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-AC--GGACGUGCUUGUCCACCCA-CCCGCGAGGACAUA --.((((((.((((((..((.....))..)))))).))))-)).((.((((....)))).))((((((((((((-..--(((((....))))).....-.)))))))))))). ( -49.60, z-score = -3.51, R) >droYak2.chr3R 7929505 105 - 28832112 --GCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUUUU-GGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-AC--GGUCGUGACU-UCCACCCA-CCCGCGAGGACAUA --.((((((.((((((..((.....))..)))))).))))-)).((.((((....)))).))((((((((((((-..--((..(((...-..))))).-.)))))))))))). ( -48.70, z-score = -3.46, R) >droEre2.scaffold_4820 8035011 105 - 10470090 --GCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUUUU-GGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-AC--GGUCGUGAUU-UCCACCCA-CCCGCGAGGACAUA --.((((((.((((((..((.....))..)))))).))))-)).((.((((....)))).))((((((((((((-..--((..(((...-..))))).-.)))))))))))). ( -48.70, z-score = -3.54, R) >droAna3.scaffold_12911 5269688 108 + 5364042 --GUCAAAAUUCCAUUGCGCUGAGGGCACGAUGGAUUUUU-GGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGGGAC--AGUGGUCGCUGCUCACCCAACCCGCGAGGACAUG --.((((((.(((((((.((.....)).))))))).))))-)).((.((((....)))).))(((((((((((((..--.(((((....)).)))....))))))))))))). ( -50.50, z-score = -3.30, R) >dp4.chr2 2433909 107 + 30794189 --GCCAAAUAUUCAUUGCGCUAAGGGCACGAUGGAUUUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGG-GU--ACACACUCUCGGGCGAAUC-CCCAUGAGGACAUA --.(((((.((((((((.((.....)).))))))))..))))).((.((((....)))).))(((((((..(((-(.--...(.((....)).)....-))))..))))))). ( -45.20, z-score = -3.38, R) >droPer1.super_7 2603618 107 + 4445127 --GCCAAAUAUUCAUUGCGCUAAGGGCACGAUGGAUUUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGG-GU--ACACACUCUCGGGCGGAUC-CCCAUGAGGACAUA --.(((((.((((((((.((.....)).))))))))..))))).((.((((....)))).))(((((((..(((-(.--(..(.((....)).)..).-))))..))))))). ( -46.50, z-score = -3.55, R) >droVir3.scaffold_12855 1128896 89 + 10161210 GCAAAAACAUUUCAUUGCGCUUGGCGCA---UGGAUUUUU-GGACAGCGCUGGCAGGCGGUGGUGUCUUUGUGGUGC----GCUCCAUAAAG-ACAUA--------------- .((((((...(((((.((((...)))))---)))))))))-)..((.((((....)))).))((((((((((((...----...))))))))-)))).--------------- ( -35.30, z-score = -2.77, R) >droMoj3.scaffold_6540 26883396 87 + 34148556 --GCAAAAAUUUCAUUGCGCUUGGCGCG---UGGAUUUUU-GGACAGCGCUGGCAGGCGGUGGUGUCAUUGUGGUUU----ACACCACAAUG-GCAUA--------------- --.((((((((.(((.((((...)))))---)))))))))-)..((.((((....)))).))(((((((((((((..----..)))))))))-)))).--------------- ( -38.50, z-score = -4.27, R) >droGri2.scaffold_14624 3713481 92 + 4233967 --CAAACCAAUUCAUUGCGCUUGGCGCA---UGGAUUUUU-GGACAGCGCUGGCAGGCGGUGGUGUCUUUGUGGUUCCUAUGAACCACAAAGUACAUA--------------- --....(((((((((.((((...)))))---)))))...)-)).((.((((....)))).))(((((((((((((((....))))))))))).)))).--------------- ( -38.90, z-score = -4.14, R) >consensus __GCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUUUU_GGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGG_AC__GGACGUGAUUGUCCACCCA_CCCGCGAGGACAUA ..........((((.(((.......)))...))))......(((((.(((((.....))))).)))))................................((....))..... (-19.84 = -19.61 + -0.23)
| Location | 25,567,283 – 25,567,373 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.50030 |
| G+C content | 0.50350 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -21.22 |
| Energy contribution | -20.16 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.81 |
| SVM RNA-class probability | 0.995513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25567283 90 + 27905053 UUUUUGGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-ACGGACGUGCUUGUCCACCCA-CCCGCGAGG-ACAUACAAUUAGAU-----AUUUAGUU-- ...(((..((.((((....)))).))((((((((((((-..(((((....))))).....-.))))))))-)))).)))......-----........-- ( -32.90, z-score = -1.97, R) >droSim1.chr3R 25239738 90 + 27517382 UUUUUGGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-ACGGACGUGCUUGUCCACCCA-CCCGCGAGG-ACAUACAAUUAGAU-----AUUUAGUU-- ...(((..((.((((....)))).))((((((((((((-..(((((....))))).....-.))))))))-)))).)))......-----........-- ( -32.90, z-score = -1.97, R) >droSec1.super_4 4420036 90 + 6179234 UUUUUGGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-ACGGACGUGCUUGUCCACCCA-CCCGCGAGG-ACAUACAAUUAGAU-----AUUUAGUU-- ...(((..((.((((....)))).))((((((((((((-..(((((....))))).....-.))))))))-)))).)))......-----........-- ( -32.90, z-score = -1.97, R) >droYak2.chr3R 7929538 89 - 28832112 UUUUUGGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-ACGGUCGUGACU-UCCACCCA-CCCGCGAGG-ACAUACAAUUAGAU-----AUUUAGUU-- ...(((..((.((((....)))).))((((((((((((-..((..(((...-..))))).-.))))))))-)))).)))......-----........-- ( -32.00, z-score = -1.91, R) >droEre2.scaffold_4820 8035044 89 - 10470090 UUUUUGGACAGCGCUGGCUGGCGGUGGUGUCCUUGUGG-ACGGUCGUGAUU-UCCACCCA-CCCGCGAGG-ACAUACAAUUAGAU-----AUUUAGUU-- ...(((..((.((((....)))).))((((((((((((-..((..(((...-..))))).-.))))))))-)))).)))......-----........-- ( -32.00, z-score = -2.10, R) >droAna3.scaffold_12911 5269721 92 + 5364042 UUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGGGACAGUGGUCGCUGCUCACCCAACCCGCGAGG-ACAUGCAAGUAGUU-----AUUUAGUU-- ..((((..((.((((....)))).))(((((((((((((...(((((....)).)))....)))))))))-)))).)))).....-----........-- ( -34.10, z-score = -1.15, R) >dp4.chr2 2433943 92 + 30794189 UUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGG-GUACACACUCUCGGGCGAAUC-CCCAUGAGG-ACAUACAAUUAGUU-----AUUUAGAUUU ..((((((((.((((....)))).))(((((((..(((-(....(.((....)).)....-))))..)))-))))..........-----.))))))... ( -30.30, z-score = -1.90, R) >droPer1.super_7 2603652 92 + 4445127 UUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGG-GUACACACUCUCGGGCGGAUC-CCCAUGAGG-ACAUACAAUUAGUU-----AUUUAGAUUU ..((((((((.((((....)))).))(((((((..(((-(.(..(.((....)).)..).-))))..)))-))))..........-----.))))))... ( -31.60, z-score = -2.12, R) >droVir3.scaffold_12855 1128928 79 + 10161210 UUUUUGGACAGCGCUGGCAGGCGGUGGUGUCUUUGUGG------------UG----CGCU--CCAUAAAG-ACAUACAAUUAGUUAGUAUAUUUGGCU-- ...(((..((.((((....)))).))((((((((((((------------..----....--))))))))-)))).)))..((((((.....))))))-- ( -26.90, z-score = -2.42, R) >droMoj3.scaffold_6540 26883426 77 + 34148556 UUUUUGGACAGCGCUGGCAGGCGGUGGUGUCAUUGUGG------------UU----UACA--CCACAAUG-GCAUACAAGUAGUU--AAUACAUGGCU-- ........((.((((....)))).))((((((((((((------------(.----...)--))))))))-)))).((.(((...--..))).))...-- ( -28.40, z-score = -3.24, R) >droGri2.scaffold_14624 3713511 82 + 4233967 UUUUUGGACAGCGCUGGCAGGCGGUGGUGUCUUUGUGG------------UUCCUAUGAA--CCACAAAGUACAUACUAUUUAGU--UAUAUUUGGCU-- ....(((.((.((((....)))).))((((((((((((------------(((....)))--)))))))).)))).)))...(((--((....)))))-- ( -28.90, z-score = -3.37, R) >consensus UUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGG_ACGGACGUGCUUGUCCACCCA_CCCGCGAGG_ACAUACAAUUAGAU_____AUUUAGUU__ ...(((..((.((((....)))).))((((((((((((........................)))))))).)))).)))..................... (-21.22 = -20.16 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:23 2011