| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,540,566 – 25,540,682 |
| Length | 116 |
| Max. P | 0.548639 |
| Location | 25,540,566 – 25,540,682 |
|---|---|
| Length | 116 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 65.19 |
| Shannon entropy | 0.72003 |
| G+C content | 0.51498 |
| Mean single sequence MFE | -36.18 |
| Consensus MFE | -12.63 |
| Energy contribution | -12.21 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25540566 116 + 27905053 ACGAGCCACCUGGACGACUGGGCCUUCCUGGCCUACAGGUGCGCCACUUCCGGGCAGUUUGGCCAUUGGGUCAAGGACUUCAU---GAGUCAAAAGGAAGUGGAACGAUGAAAUACAAU .((.((.(((((......((((((.....))))))))))))).((((((((......(((((((....)))))))(((((...---)))))....))))))))..))............ ( -44.50, z-score = -2.18, R) >droSim1.chr3R 25213137 116 + 27517382 ACGAGCCACCUGGACGACUGGGCCUUCCUGGCCUACAGGUGCGCCACUUCCGGCCAGUUUGGCCAUUGGGUCAAGGACUUCAU---GAGUCAAAAGGACGUGGAUCAAUGAAAUACAAU ..((((.(((((......((((((.....))))))))))))).((((.(((((((.....)))).((((.(((.(.....).)---)).))))..))).)))).))............. ( -41.80, z-score = -1.53, R) >droSec1.super_4 4394723 116 + 6179234 CCGAGCCGCCUGGACGACUGGGCCUUCCUGGCCUACAGGUGCGCCACUUCCGGGCAGUUUGGCCAUUGGGUCAAGGACUUCAU---GAGUCAAAAGAAAGUGGAACGAUGAAAUACAAU ((((((.(((((((.(..((((((.....))))))..((....)).).))))))).)))))).(((((..(((..(((((...---))))).........)))..)))))......... ( -42.00, z-score = -1.42, R) >droYak2.chr3R 7903254 116 - 28832112 ACGGGCCACCUGGAUGACUGGGCCUUCCUGGCCUACAGGUGCGCCACUUCCGGCCAGUUUGGCCAUUGGGUCAAGGACUUUAU---GAGUCAAAAGGAAGCGGAACAAUGAAAUACAAG .(((((((((((......((((((.....)))))))))))).))).(((((((((.....)))).((((.(((.........)---)).))))..)))))))................. ( -44.40, z-score = -2.04, R) >droEre2.scaffold_4820 8009775 116 - 10470090 ACGCAUCACCUGGAUGACUGGGCCUUCCUGGCCUACAGGUGUGCCACUUCCGGCCAGUUUGGCCAUUGGGUCAAGGACUUCAU---GAGUCAAAAGGAAGCUGAACAAUGAAAUACAAG ..(((.((((((......((((((.....)))))))))))))))(((((((((((.....)))).((((.(((.(.....).)---)).))))..))))).))................ ( -42.00, z-score = -1.98, R) >droAna3.scaffold_12911 5243214 102 + 5364042 AUAAGGGAUCCCAGUAAUUGGGCCUUCGAGGCCUACAAGUGCGCCACUGCGGGACAAUUCGGUCGUUGGGUGAAGGACUAUAU---GAAGGAAAAA--GGAAAUUAG------------ ........((((.(((..((((((.....))))))....)))((....))))))...(((..(((((((........))).))---))..)))...--.........------------ ( -24.20, z-score = 0.75, R) >droWil1.scaffold_181089 5828445 109 + 12369635 ACCGACGACCUCAAUAAAUGGGCAUAUAAGGCAUAUAAAUGCGCCACUUCAGGCAGAUUUGGACAUUGGGUUAAUGAGUAUAU---GAAACAAGAAAUGGAAACAAAAUAAA------- ......(((((.....((((..((......((((....))))(((......))).....))..)))))))))...........---...........((....)).......------- ( -17.70, z-score = -0.03, R) >droVir3.scaffold_12855 1103101 102 + 10161210 AAGCAGCAGCCGGCACAGUGGGCCUAUGCGGCCUACAAGUGUGCGACAGCAGGCAGAUUUGGCCGAUGGGUCGAGGAAUACAU----GAAUAAUAUCAAAUAAAAA------------- ........(((.((((.(((((((.....)))))))..))))((....)).)))...(((((((....)))))))........----...................------------- ( -30.90, z-score = -1.10, R) >droMoj3.scaffold_6540 26858097 111 + 34148556 CAGCAGAAGCCCGCACAGUGGGCCUAUGCGGCCUACAAGUGCGCCACGGCUGGCACCCUGGGACAGUGGCUGAGGGAGUACAA---GAGGCAAAUGCAGGCAAUCAAAUAAAGA----- ..(((...((((((((.(((((((.....)))))))..))))((((....)))).((((.((.......)).)))).......---).)))...))).................----- ( -40.90, z-score = -0.80, R) >droGri2.scaffold_14624 3685334 114 + 4233967 GAGAAGGAGCCGGCACAGUGGGCCUACAACGCCUACAAAUGUGCCACAUCGGGCAGAUUUGGCGAAUGGGUCAACGAUUACUAUGUGAAGCAACUGCAGGCAGUUAAAUCAAAG----- ........(((((((((((((((.......))))))...)))))).......((((..(((((......)))))...((((...)))).....)))).))).............----- ( -33.40, z-score = -1.06, R) >consensus ACGAACCACCUGGAUGACUGGGCCUUCCUGGCCUACAAGUGCGCCACUUCCGGCCAGUUUGGCCAUUGGGUCAAGGACUACAU___GAGUCAAAAGGAAGCAGAAAAAUGAAAU_____ .......((((.......((((((.....))))))(((((...((......))...)))))......))))................................................ (-12.63 = -12.21 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:19 2011