| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,527,043 – 25,527,104 |
| Length | 61 |
| Max. P | 0.872733 |
| Location | 25,527,043 – 25,527,104 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 93.11 |
| Shannon entropy | 0.11876 |
| G+C content | 0.60656 |
| Mean single sequence MFE | -17.70 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.46 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25527043 61 - 27905053 UCCGCUGGCCGUUUGUUGCCGCCAGUGAUGAUGACCCCAUCCGGUGUCCUUUUCCGUCGCA ..(((((((.((.....)).))))))).....(((.((....)).)))............. ( -17.60, z-score = -1.66, R) >droSim1.chr3R 25199454 61 - 27517382 UCCGCUGGCCGUUUGUCGCCGCCAGUGAUGAUGACCCCAUCCGGUGUCCAUUCCCGUCACA ..(((((((.((.....)).)))))))..((((....))))(((.(......))))..... ( -17.30, z-score = -1.20, R) >droSec1.super_4 4381219 61 - 6179234 UCCGCUGGCCGUUUGUCGCCGCCAGUGAUGAUGACCCCAUCCGGUGUCCAUUCCCGUCACA ..(((((((.((.....)).)))))))..((((....))))(((.(......))))..... ( -17.30, z-score = -1.20, R) >droYak2.chr3R 7888082 61 + 28832112 UCCGCUGGCCGCUUGUCGCCGCCAGUGAUGAUGACCCCAUCCGGUGUCCUUUUCUGUCACA ..(((((((.((.....)).))))))).(((((((.((....)).))).......)))).. ( -19.41, z-score = -2.20, R) >droEre2.scaffold_4820 7995790 61 + 10470090 UCCGCUGGCCGUUUGUCGCCGCCAGUGAUGAUGACCCUAUCCGUUGUCCUUUUCUGGCACA ......(((........)))(((((.((.((..((.......))..)).))..)))))... ( -16.90, z-score = -1.60, R) >consensus UCCGCUGGCCGUUUGUCGCCGCCAGUGAUGAUGACCCCAUCCGGUGUCCUUUUCCGUCACA ..(((((((.((.....)).))))))).....(((.((....)).)))............. (-16.58 = -16.46 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:17 2011