| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,487,435 – 25,487,488 |
| Length | 53 |
| Max. P | 0.581500 |
| Location | 25,487,435 – 25,487,488 |
|---|---|
| Length | 53 |
| Sequences | 8 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 88.06 |
| Shannon entropy | 0.22331 |
| G+C content | 0.53065 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -12.42 |
| Energy contribution | -12.55 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25487435 53 + 27905053 CCAGAAUCAGGAGCAGAA-----CGAACUUCCUGCUGCCUGAAUGCGCCUGAGUCAAU ...((.((((((((((..-----........)))))((......)).))))).))... ( -15.00, z-score = -1.69, R) >droSim1.chr3R 25158490 53 + 27517382 CCAGAAUCAGGAGCAGAA-----CGAACUUCCUGCUGCCUGAAUGCGCCUGAGUCAAU ...((.((((((((((..-----........)))))((......)).))))).))... ( -15.00, z-score = -1.69, R) >droSec1.super_4 4342198 53 + 6179234 CCAGAAUCAGGAGCAGAA-----CGAAUUUCCUGCUGCCUGAAUGCGCCUGAGUCAAU ...((.((((((((((..-----........)))))((......)).))))).))... ( -15.00, z-score = -1.72, R) >droYak2.chr3R 7846841 53 - 28832112 CCAGAAUCAGGAGCAGAA-----CGAACUUCCUGCUGCCUGAAUGCGCCCGAGUCAAU ......((((((((((..-----........))))).)))))................ ( -13.80, z-score = -1.41, R) >droEre2.scaffold_4820 7955266 53 - 10470090 CCAGAAUCAGGAGCAGAA-----CGAACUUCCUGCUGCCUGAAUGCGCCUGAGUCAAU ...((.((((((((((..-----........)))))((......)).))))).))... ( -15.00, z-score = -1.69, R) >droAna3.scaffold_12911 5181418 53 + 5364042 CCUGAAUCAAGAGCAGUG-----CCAACUUCCUGCUGCCUGAAUGCUUCUGAGUCAAU ..(((.(((..((((..(-----.((.(.....).)).)....))))..))).))).. ( -10.60, z-score = -0.36, R) >droPer1.super_7 2521946 58 + 4445127 CCAGAAUCAGGAGCAGAGUAGAGCCAACUUCCUGCUGCCUGACUGCCUCCGAGUCAAU .(((..((((((((((.(.((......)).)))))).))))))))............. ( -16.00, z-score = -0.94, R) >dp4.chr2 2356293 57 + 30794189 -CAGAAUCAGGAGCAGAGCAGAGCCAACUUCCUGCUGCCUGACUGCCUCCGAGUCAAU -(((..((((((((((.(.((......)).)))))).))))))))............. ( -15.70, z-score = -0.35, R) >consensus CCAGAAUCAGGAGCAGAA_____CGAACUUCCUGCUGCCUGAAUGCGCCUGAGUCAAU ......((((((((((...............))))).)))))................ (-12.42 = -12.55 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:14 2011