| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,458,525 – 25,458,630 |
| Length | 105 |
| Max. P | 0.526269 |
| Location | 25,458,525 – 25,458,630 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.37815 |
| G+C content | 0.57849 |
| Mean single sequence MFE | -23.26 |
| Consensus MFE | -17.72 |
| Energy contribution | -17.47 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25458525 105 - 27905053 UACAUUAUCAUUCCUUUUUGUCCCUUUCUGCCCCC-UUUUUUCUCACAGUGUCACGUGGCCGCUGCAAUGGUGGCCGCCUCCACCUCCUUCGGCUACCACUCGGUG .............................(((...-..........(((((((....)).)))))...(((((((((.............)))))))))...))). ( -21.92, z-score = -1.36, R) >droEre2.scaffold_4820 7928632 105 + 10470090 CACAUUAUCACUGCUUUUCGUGCCCUGCU-CCCCCGUUUUUUCUCACAGUGUCACGUGGCCGCUGCAAUGGUGGCCGCCUCCACCUCCUUCGGCUACCACUCGGUG ............(((...(((((.(((..-................))).).)))).)))(((((...(((((((((.............)))))))))..))))) ( -26.49, z-score = -1.18, R) >droYak2.chr3R 7815592 106 + 28832112 CACAUUAUCAUUGCUUUUCGACCCUUGCUGCCCCCAUUUUUUCUCACAGUGUCACGUGGCCGCUGCAAUGGUGGCCGCCUCCACCUCCUUCGGCUACCACUCGGUG ....................(((.((((.((..((((.....(.......)....))))..)).))))(((((((((.............)))))))))...))). ( -24.72, z-score = -0.76, R) >droMoj3.scaffold_6540 21984836 96 + 34148556 ----------CACCUUCUCGCUUUCUCUCUUUCCGCUCUGCCCGCACAGUGCCACGUCGCUGCCGCCAUGGUGGCCGCCUCAACAUCCUUUGGCUACCACUCUGUC ----------.........(((............((.(((......))).))...(..((.(((((....))))).))..)..........)))............ ( -19.90, z-score = -0.55, R) >consensus CACAUUAUCACUCCUUUUCGUCCCCUGCUGCCCCC_UUUUUUCUCACAGUGUCACGUGGCCGCUGCAAUGGUGGCCGCCUCCACCUCCUUCGGCUACCACUCGGUG .................................((...........(((((((....))).))))...(((((((((.............)))))))))...)).. (-17.72 = -17.47 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:12 2011